Sequence Similarity Clusters for the Entities in PDB 4HLQ

Entity #1 | Chains: A,C,E,G,I
TBC1 domain family member 20 protein, length: 305 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 16002
95 % 2 2 14928 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 2 2 14630
70 % 2 2 13645
50 % 2 2 12072
40 % 2 2 10823
30 % 2 2 9218
Entity #2 | Chains: B,D,F,H,J
Ras-related protein Rab-1B protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 5803
95 % 14 17 1611 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 2.5
PDBFlex
90 % 16 19 1553
70 % 18 21 1485
50 % 83 97 276
40 % 515 569 19
30 % 809 928 11

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4HL4 1 A TBC1 domain family member 20 UNP RESIDUES 14-305 9606
2 4HLQ 1 A, C, E, G, I TBC1 domain family member 20 9606