Sequence Similarity Clusters for the Entities in PDB 4HLQ

Entity #1 | Chains: A,C,E,G,I
TBC1 domain family member 20 protein, length: 305 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 16114
95 % 2 2 15033 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 2 2 14741
70 % 2 2 13751
50 % 2 2 12174
40 % 2 2 10912
30 % 2 2 9297
Entity #2 | Chains: B,D,F,H,J
Ras-related protein Rab-1B protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 5855
95 % 14 17 1626 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 2.5
PDBFlex
90 % 16 19 1559
70 % 18 21 1493
50 % 83 97 287
40 % 522 577 20
30 % 810 929 11

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures