Sequence Similarity Clusters for the Entities in PDB 4HLQ

Entity #1 | Chains: A,C,E,G,I
TBC1 domain family member 20 protein, length: 305 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 12489
95 % 2 2 12117 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 2 2 11948
70 % 2 2 11296
50 % 2 2 10129
40 % 2 2 9214
30 % 2 2 8066
Entity #2 | Chains: B,D,F,H,J
Ras-related protein Rab-1B protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 5340
95 % 14 17 1455 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 1.9
PDBFlex
90 % 16 19 1396
70 % 18 21 1335
50 % 74 85 286
40 % 429 478 21
30 % 711 817 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures