Sequence Similarity Clusters for the Entities in PDB 4HLQ

Entity #1 | Chains: A,C,E,G,I
TBC1 domain family member 20 protein, length: 305 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 12111
95 % 2 2 11790 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 2 2 11632
70 % 2 2 11010
50 % 2 2 9870
40 % 2 2 8986
30 % 2 2 7866
Entity #2 | Chains: B,D,F,H,J
Ras-related protein Rab-1B protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 5167
95 % 14 17 1404 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 1.9
PDBFlex
90 % 16 19 1357
70 % 18 21 1297
50 % 74 85 271
40 % 397 444 22
30 % 672 775 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.