Sequence Similarity Clusters for the Entities in PDB 4HKJ

Entity #1 | Chains: A,E,I,M
H-2 class I histocompatibility antigen, K-B alpha chain protein, length: 280 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 4975
95 % 61 65 426 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 65 70 391
70 % 705 746 6
50 % 716 760 7
40 % 760 812 9
30 % 866 939 13
Entity #2 | Chains: B,F,J,N
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 630 675 2
95 % 643 690 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 652 699 4
70 % 883 953 4
50 % 899 975 3
40 % 899 975 6
30 % 899 975 9
Entity #3 | Chains: C,G,K,O
Ovalbumin protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,H,L,P
CPXV203 protein protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19563
95 % 1 1 17832 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 17395
70 % 1 1 16108
50 % 1 1 14095
40 % 1 1 12578
30 % 1 1 10598

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures