Sequence Similarity Clusters for the Entities in PDB 4HKJ

Entity #1 | Chains: A,E,I,M
H-2 class I histocompatibility antigen, K-B alpha chain protein, length: 280 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 49 286
95 % 61 65 313
90 % 65 70 314
70 % 578 609 7
50 % 580 614 7
40 % 613 654 11
30 % 707 767 13
Entity #2 | Chains: B,F,J,N
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 490 525 2
95 % 530 566 3
90 % 539 575 3
70 % 741 798 5
50 % 753 816 5
40 % 753 816 9
30 % 753 816 12
Entity #3 | Chains: C,G,K,O
Ovalbumin protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,H,L,P
CPXV203 protein protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 18629
95 % 1 1 16256
90 % 1 1 15854
70 % 1 1 14728
50 % 1 1 12889
40 % 1 1 11529
30 % 1 1 9898

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.