Sequence Similarity Clusters for the Entities in PDB 4HKJ

Entity #1 | Chains: A,E,I,M
H-2 class I histocompatibility antigen, K-B alpha chain protein, length: 280 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 49 364
95 % 61 65 342
90 % 65 70 347
70 % 624 657 7
50 % 626 662 7
40 % 667 710 11
30 % 763 827 15
Entity #2 | Chains: B,F,J,N
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 539 577 2
95 % 581 620 3
90 % 590 629 4
70 % 796 857 5
50 % 810 877 4
40 % 810 877 9
30 % 810 877 14
Entity #3 | Chains: C,G,K,O
Ovalbumin protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,H,L,P
CPXV203 protein protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 20204
95 % 1 1 17538
90 % 1 1 17105
70 % 1 1 15850
50 % 1 1 13831
40 % 1 1 12332
30 % 1 1 10569

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.