Sequence Similarity Clusters for the Entities in PDB 4HKJ

Entity #1 | Chains: A,E,I,M
H-2 class I histocompatibility antigen, K-B alpha chain protein, length: 280 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 49 331
95 % 61 65 331
90 % 65 70 332
70 % 611 644 7
50 % 613 649 7
40 % 648 691 11
30 % 744 807 14
Entity #2 | Chains: B,F,J,N
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 521 558 2
95 % 563 601 3
90 % 572 610 4
70 % 777 837 5
50 % 791 857 5
40 % 791 857 9
30 % 791 857 13
Entity #3 | Chains: C,G,K,O
Ovalbumin protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,H,L,P
CPXV203 protein protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 19846
95 % 1 1 17240
90 % 1 1 16813
70 % 1 1 15583
50 % 1 1 13616
40 % 1 1 12134
30 % 1 1 10390

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.