Sequence Similarity Clusters for the Entities in PDB 4HKJ

Entity #1 | Chains: A,E,I,M
H-2 class I histocompatibility antigen, K-B alpha chain protein, length: 280 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 49 432
95 % 61 65 399 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 65 70 374
70 % 688 727 6
50 % 690 732 6
40 % 734 783 10
30 % 839 909 15
Entity #2 | Chains: B,F,J,N
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 581 624 2
95 % 624 668 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 633 677 4
70 % 857 924 4
50 % 873 946 3
40 % 873 946 7
30 % 873 946 12
Entity #3 | Chains: C,G,K,O
Ovalbumin protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,H,L,P
CPXV203 protein protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22063
95 % 1 1 19075 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 18579
70 % 1 1 17169
50 % 1 1 14897
40 % 1 1 13262
30 % 1 1 11358

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures