Sequence Similarity Clusters for the Entities in PDB 4HKJ

Entity #1 | Chains: A,E,I,M
H-2 class I histocompatibility antigen, K-B alpha chain protein, length: 280 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 49 290
95 % 61 65 323
90 % 65 70 321
70 % 587 619 7
50 % 589 624 7
40 % 622 664 11
30 % 717 778 13
Entity #2 | Chains: B,F,J,N
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 499 534 2
95 % 541 577 3
90 % 550 586 4
70 % 753 811 5
50 % 765 829 5
40 % 765 829 9
30 % 765 829 12
Entity #3 | Chains: C,G,K,O
Ovalbumin protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,H,L,P
CPXV203 protein protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 19226
95 % 1 1 16728
90 % 1 1 16314
70 % 1 1 15148
50 % 1 1 13234
40 % 1 1 11809
30 % 1 1 10125

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.