Sequence Similarity Clusters for the Entities in PDB 4HKJ

Entity #1 | Chains: A,E,I,M
H-2 class I histocompatibility antigen, K-B alpha chain protein, length: 280 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 49 403
95 % 61 65 358
90 % 65 70 361
70 % 658 692 6
50 % 660 697 6
40 % 704 748 10
30 % 803 868 15
Entity #2 | Chains: B,F,J,N
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 562 600 2
95 % 605 644 3
90 % 614 653 4
70 % 824 885 4
50 % 840 907 3
40 % 840 907 9
30 % 840 907 14
Entity #3 | Chains: C,G,K,O
Ovalbumin protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,H,L,P
CPXV203 protein protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 21221
95 % 1 1 18417
90 % 1 1 17944
70 % 1 1 16584
50 % 1 1 14423
40 % 1 1 12854
30 % 1 1 10999

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.