Sequence Similarity Clusters for the Entities in PDB 4HG4

Entity #1 | Chains: A,B,C,D,E,F,G,H,I
Hemagglutinin HA1 protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 6279
95 % 10 10 2829
90 % 11 11 2417
70 % 83 85 164
50 % 166 174 79
40 % 310 330 17
30 % 317 337 27
Entity #2 | Chains: a,b,c,d,e,f,g,h,i
Hemagglutinin HA2 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 7 3093
95 % 11 11 2380
90 % 84 86 142
70 % 164 174 31
50 % 303 325 10
40 % 311 335 15
30 % 311 335 28
Entity #3 | Chains: J,L,N,P,R,T,V,X,Z
Fab 2G1 heavy chain protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 7338
95 % 1 1 7905
90 % 29 29 1221
70 % 2075 2342 2
50 % 4295 4843 1
40 % 4295 4843 1
30 % 5098 5705 1
Entity #4 | Chains: K,M,O,Q,S,U,W,Y,z
Fab 2G1 light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 7368
95 % 1 1 7937
90 % 662 746 3
70 % 2119 2392 1
50 % 4296 4843 1
40 % 4296 4843 1
30 % 5099 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures