Sequence Similarity Clusters for the Entities in PDB 4HG4

Entity #1 | Chains: A,B,C,D,E,F,G,H,I
Hemagglutinin HA1 protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 6261
95 % 10 10 3193 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 11 11 2740
70 % 86 89 171
50 % 172 185 89
40 % 337 365 19
30 % 345 374 31
Entity #2 | Chains: a,b,c,d,e,f,g,h,i
Hemagglutinin HA2 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 3951
95 % 11 11 2677 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.3
PDBFlex
90 % 87 90 149
70 % 172 187 47
50 % 336 366 12
40 % 345 377 17
30 % 351 383 30
Entity #3 | Chains: J,L,N,P,R,T,V,X,Z
Fab 2G1 heavy chain protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 8866
95 % 1 1 8891
90 % 52 60 439
70 % 2360 2728 2
50 % 4867 5625 1
40 % 5489 6382 1
30 % 6840 7934 1
Entity #4 | Chains: K,M,O,Q,S,U,W,Y,z
Fab 2G1 light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 3891
95 % 5 6 4237
90 % 749 865 2
70 % 2389 2765 1
50 % 4868 5625 1
40 % 5490 6382 1
30 % 6841 7934 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures