Sequence Similarity Clusters for the Entities in PDB 4HG4

Entity #1 | Chains: A,B,C,D,E,F,G,H,I
Hemagglutinin HA1 protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 6180
95 % 10 10 2786 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 11 11 2374
70 % 83 85 159
50 % 165 173 77
40 % 307 327 17
30 % 314 334 25
Entity #2 | Chains: a,b,c,d,e,f,g,h,i
Hemagglutinin HA2 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 3034
95 % 11 11 2338 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.4
PDBFlex
90 % 84 86 139
70 % 163 173 30
50 % 302 324 10
40 % 310 334 15
30 % 310 334 26
Entity #3 | Chains: J,L,N,P,R,T,V,X,Z
Fab 2G1 heavy chain protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 7211
95 % 1 1 7790 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 28 28 1230
70 % 2018 2280 2
50 % 4175 4713 1
40 % 4175 4713 1
30 % 4970 5567 1
Entity #4 | Chains: K,M,O,Q,S,U,W,Y,z
Fab 2G1 light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 7241
95 % 1 1 7819 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 638 720 3
70 % 2059 2327 1
50 % 4176 4713 1
40 % 4176 4713 1
30 % 4971 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.