Sequence Similarity Clusters for the Entities in PDB 4HG4

Entity #1 | Chains: A,B,C,D,E,F,G,H,I
Hemagglutinin HA1 protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 5825
95 % 10 10 2986 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 11 11 2581
70 % 84 87 162
50 % 167 176 79
40 % 323 345 15
30 % 331 353 28
Entity #2 | Chains: a,b,c,d,e,f,g,h,i
Hemagglutinin HA2 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 3640
95 % 11 11 2504 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.3
PDBFlex
90 % 85 88 140
70 % 165 176 31
50 % 314 337 10
40 % 322 347 16
30 % 328 353 30
Entity #3 | Chains: J,L,N,P,R,T,V,X,Z
Fab 2G1 heavy chain protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 8284
95 % 1 1 8327 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 37 38 813
70 % 2219 2532 2
50 % 4580 5225 1
40 % 5139 5883 1
30 % 6402 7321 1
Entity #4 | Chains: K,M,O,Q,S,U,W,Y,z
Fab 2G1 light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 3658
95 % 5 6 4012 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 688 783 1
70 % 2254 2576 1
50 % 4581 5225 1
40 % 5140 5883 1
30 % 6403 7321 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures