Sequence Similarity Clusters for the Entities in PDB 4HG4

Entity #1 | Chains: A,B,C,D,E,F,G,H,I
Hemagglutinin HA1 protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 5941
95 % 10 10 3033 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 11 11 2614
70 % 84 87 165
50 % 167 176 84
40 % 326 348 16
30 % 334 356 29
Entity #2 | Chains: a,b,c,d,e,f,g,h,i
Hemagglutinin HA2 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 3714
95 % 11 11 2543 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.3
PDBFlex
90 % 85 88 142
70 % 165 176 45
50 % 317 340 11
40 % 325 350 17
30 % 331 356 30
Entity #3 | Chains: J,L,N,P,R,T,V,X,Z
Fab 2G1 heavy chain protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 8421
95 % 1 1 8460 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 43 49 539
70 % 2258 2580 2
50 % 4659 5323 1
40 % 5227 6003 1
30 % 6501 7460 1
Entity #4 | Chains: K,M,O,Q,S,U,W,Y,z
Fab 2G1 light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 3732
95 % 5 6 4092 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.2
PDBFlex
90 % 710 811 2
70 % 2291 2621 1
50 % 4660 5323 1
40 % 5228 6003 1
30 % 6502 7460 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures