Sequence Similarity Clusters for the Entities in PDB 4HFU

Entity #1 | Chains: A
Hemagglutinin HA1 protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 6043
95 % 6 10 2721 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 6 11 2334
70 % 66 85 157
50 % 110 160 80
40 % 215 307 16
30 % 218 314 26
Entity #2 | Chains: B
Hemagglutinin HA2 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 2954
95 % 6 11 2294 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.4
PDBFlex
90 % 66 86 137
70 % 109 161 44
50 % 215 305 11
40 % 219 315 15
30 % 219 315 27
Entity #3 | Chains: H
Fab 8M2 heavy chain protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58354
95 % 1 1 41036
90 % 1 1 39181
70 % 1614 2222 2
50 % 3339 4587 1
40 % 3339 4587 1
30 % 3926 5392 1
Entity #4 | Chains: L
Fab 8M2 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59317
95 % 3 6 10201 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 2.2
PDBFlex
90 % 507 693 3
70 % 1644 2264 1
50 % 3340 4587 1
40 % 3340 4587 1
30 % 3927 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.