Sequence Similarity Clusters for the Entities in PDB 4HFU

Entity #1 | Chains: A
Hemagglutinin HA1 protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 6116
95 % 6 10 2750 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 6 11 2357
70 % 66 85 157
50 % 115 167 78
40 % 220 314 17
30 % 223 321 26
Entity #2 | Chains: B
Hemagglutinin HA2 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 2994
95 % 6 11 2318 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.3
PDBFlex
90 % 66 86 138
70 % 114 168 41
50 % 220 312 10
40 % 224 322 15
30 % 224 322 27
Entity #3 | Chains: H
Fab 8M2 heavy chain protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59115
95 % 1 1 41596
90 % 1 1 39697
70 % 1626 2244 2
50 % 3365 4633 1
40 % 3365 4633 1
30 % 3968 5460 1
Entity #4 | Chains: L
Fab 8M2 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60090
95 % 23 32 1116 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.8
PDBFlex
90 % 511 701 3
70 % 1657 2287 1
50 % 3366 4633 1
40 % 3366 4633 1
30 % 3969 5460 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.