Sequence Similarity Clusters for the Entities in PDB 4HFU

Entity #1 | Chains: A
Hemagglutinin HA1 protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 6329
95 % 6 10 2854 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 6 11 2450
70 % 66 85 164
50 % 120 174 79
40 % 234 330 17
30 % 238 338 27
Entity #2 | Chains: B
Hemagglutinin HA2 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 3126
95 % 6 11 2413 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.4
PDBFlex
90 % 66 86 142
70 % 119 174 31
50 % 232 325 10
40 % 236 335 16
30 % 236 335 28
Entity #3 | Chains: H
Fab 8M2 heavy chain protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60857
95 % 1 1 42775
90 % 1 1 40769
70 % 1726 2376 2
50 % 3580 4913 1
40 % 3580 4913 1
30 % 4219 5780 1
Entity #4 | Chains: L
Fab 8M2 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61875
95 % 23 32 1158
90 % 559 763 2
70 % 1764 2426 1
50 % 3581 4913 1
40 % 3581 4913 1
30 % 4220 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures