Sequence Similarity Clusters for the Entities in PDB 4HFU

Entity #1 | Chains: A
Hemagglutinin HA1 protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 6436
95 % 6 10 2895 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 6 11 2490
70 % 67 86 167
50 % 121 175 78
40 % 244 340 17
30 % 248 348 27
Entity #2 | Chains: B
Hemagglutinin HA2 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 3161
95 % 6 11 2451 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.4
PDBFlex
90 % 67 87 143
70 % 120 175 30
50 % 242 335 10
40 % 246 345 16
30 % 246 345 28
Entity #3 | Chains: H
Fab 8M2 heavy chain protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61661
95 % 1 1 43326
90 % 1 1 41277
70 % 1764 2429 2
50 % 3658 5021 1
40 % 3658 5021 1
30 % 4355 5951 1
Entity #4 | Chains: L
Fab 8M2 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62695
95 % 23 32 1176
90 % 583 791 2
70 % 1802 2479 1
50 % 3659 5021 1
40 % 3659 5021 1
30 % 4356 5951 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures