Sequence Similarity Clusters for the Entities in PDB 4HFU

Entity #1 | Chains: A
Hemagglutinin HA1 protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 6210
95 % 6 10 2805 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 6 11 2394
70 % 66 85 162
50 % 119 173 78
40 % 232 328 17
30 % 235 335 27
Entity #2 | Chains: B
Hemagglutinin HA2 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 3051
95 % 6 11 2358 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.4
PDBFlex
90 % 66 86 141
70 % 118 173 30
50 % 231 324 10
40 % 235 334 16
30 % 235 334 28
Entity #3 | Chains: H
Fab 8M2 heavy chain protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59866
95 % 1 1 42122
90 % 1 1 40176
70 % 1665 2299 2
50 % 3451 4752 1
40 % 3451 4752 1
30 % 4079 5606 1
Entity #4 | Chains: L
Fab 8M2 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60865
95 % 23 32 1132
90 % 529 724 3
70 % 1700 2346 1
50 % 3452 4752 1
40 % 3452 4752 1
30 % 4080 5606 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.