Sequence Similarity Clusters for the Entities in PDB 4HF5

Entity #1 | Chains: A
Hemagglutinin HA1 protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 6123
95 % 9 10 2756
90 % 10 11 2360
70 % 76 85 157
50 % 143 167 78
40 % 272 321 16
30 % 279 328 25
Entity #2 | Chains: B
Hemagglutinin HA2 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 2999
95 % 10 11 2322 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.3
PDBFlex
90 % 76 86 138
70 % 142 168 42
50 % 270 319 10
40 % 274 329 15
30 % 274 329 27
Entity #3 | Chains: H
Fab 8F8 heavy chain protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58793
95 % 1 1 41420
90 % 1 1 39555
70 % 1817 2244 2
50 % 3759 4633 1
40 % 3759 4633 1
30 % 4441 5461 1
Entity #4 | Chains: L
Fab 8F8 light chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59818
95 % 1 1 41999
90 % 70 89 241
70 % 1852 2287 1
50 % 3760 4633 1
40 % 3760 4633 1
30 % 4442 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.