Sequence Similarity Clusters for the Entities in PDB 4HF5

Entity #1 | Chains: A
Hemagglutinin HA1 protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 6054
95 % 9 10 2722 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 10 11 2335
70 % 76 85 156
50 % 136 160 80
40 % 258 307 16
30 % 265 314 26
Entity #2 | Chains: B
Hemagglutinin HA2 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 2963
95 % 10 11 2295
90 % 76 86 137
70 % 135 161 44
50 % 256 305 11
40 % 260 315 15
30 % 260 315 27
Entity #3 | Chains: H
Fab 8F8 heavy chain protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58023
95 % 1 1 40869
90 % 1 1 39046
70 % 1804 2222 2
50 % 3731 4587 1
40 % 3731 4587 1
30 % 4393 5394 1
Entity #4 | Chains: L
Fab 8F8 light chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59041
95 % 1 1 41445
90 % 68 87 242
70 % 1838 2264 1
50 % 3732 4587 1
40 % 3732 4587 1
30 % 4394 5394 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.