Sequence Similarity Clusters for the Entities in PDB 4HF5

Entity #1 | Chains: A
Hemagglutinin HA1 protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 6212
95 % 9 10 2810 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 10 11 2396
70 % 76 85 162
50 % 147 173 78
40 % 277 328 17
30 % 284 335 27
Entity #2 | Chains: B
Hemagglutinin HA2 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 3059
95 % 10 11 2359 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.4
PDBFlex
90 % 76 86 141
70 % 146 173 30
50 % 274 324 10
40 % 278 334 16
30 % 278 334 28
Entity #3 | Chains: H
Fab 8F8 heavy chain protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59535
95 % 1 1 41960
90 % 1 1 40040
70 % 1870 2311 2
50 % 3879 4781 1
40 % 3879 4781 1
30 % 4585 5635 1
Entity #4 | Chains: L
Fab 8F8 light chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60582
95 % 1 1 42549
90 % 75 94 234
70 % 1913 2362 1
50 % 3880 4781 1
40 % 3880 4781 1
30 % 4586 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures