Sequence Similarity Clusters for the Entities in PDB 4HF5

Entity #1 | Chains: A
Hemagglutinin HA1 protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 6741
95 % 9 10 2935 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 10 11 2532
70 % 77 86 166
50 % 149 175 80
40 % 289 340 17
30 % 297 348 29
Entity #2 | Chains: B
Hemagglutinin HA2 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 3579
95 % 10 11 2457 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.4
PDBFlex
90 % 77 87 144
70 % 148 175 33
50 % 285 335 11
40 % 289 345 16
30 % 293 351 28
Entity #3 | Chains: H
Fab 8F8 heavy chain protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65303
95 % 1 1 52918
90 % 1 1 50163
70 % 1990 2475 2
50 % 4110 5101 1
40 % 4626 5750 1
30 % 5768 7168 1
Entity #4 | Chains: L
Fab 8F8 light chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59513
95 % 1 1 48609
90 % 79 100 231
70 % 2023 2516 1
50 % 4111 5101 1
40 % 4627 5750 1
30 % 5769 7168 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures