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Crystal structure of the entire respiratory complex I from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4HEA
Sequence Clusters for the Sequence Entities in PDB 4HEA
Entity #1: Chains: 1,B - NADH-quinone oxidoreductase subunit 1 protein, length: 438 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2205
95% 1 7 2789
90% 1 7 2823
70% 1 7 2821
50% 1 7 2799
40% 1 7 2746
30% 1 7 2546
Entity #10: Chains: A,P - NADH-quinone oxidoreductase subunit 7 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 18141
95% 1 2 15694
90% 1 2 15299
70% 1 2 14189
50% 1 2 12420
40% 1 2 11140
30% 1 2 9600
Entity #11: Chains: J,R - NADH-quinone oxidoreductase subunit 10 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 16936
95% 1 2 14822
90% 1 2 14462
70% 1 2 13461
50% 1 2 11799
40% 1 2 10566
30% 1 2 9102
Entity #12: Chains: K,S - NADH-quinone oxidoreductase subunit 11 protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 18537
95% 1 2 15987
90% 1 2 15578
70% 1 2 14433
50% 1 2 12636
40% 1 2 11344
30% 2 3 6950
Entity #13: Chains: L,T - NADH-quinone oxidoreductase subunit 12 protein, length: 606 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 12656
95% 1 2 11929
90% 1 2 11734
70% 1 2 11089
50% 1 2 9959
40% 2 3 6767
30% 2 3 6034
Entity #14: Chains: M,U - NADH-quinone oxidoreductase subunit 13 protein, length: 469 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 13142
95% 1 2 12228
90% 1 2 12022
70% 1 2 11332
50% 1 2 10138
40% 1 2 9231
30% 2 3 6083
Entity #15: Chains: N,V - NADH-quinone oxidoreductase subunit 14 protein, length: 427 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 13444
95% 1 2 12429
90% 1 2 12215
70% 1 2 11502
50% 1 2 10251
40% 1 2 9320
30% 2 3 6104
Entity #16: Chains: H,Q - NADH-quinone oxidoreductase subunit 8 protein, length: 365 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 14024
95% 1 2 12803
90% 1 2 12578
70% 1 2 11820
50% 1 2 10495
40% 1 2 9508
30% 1 2 8294
Entity #2: Chains: 2,C - NADH-quinone oxidoreductase subunit 2 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2253
95% 1 7 2854
90% 1 7 2894
70% 1 7 2891
50% 1 7 2864
40% 1 7 2800
30% 1 7 2596
Entity #3: Chains: 3,D - NADH-quinone oxidoreductase subunit 3 protein, length: 783 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2196
95% 1 7 2780
90% 1 7 2813
70% 1 7 2810
50% 1 7 2784
40% 1 7 2725
30% 1 7 2528
Entity #4: Chains: 4,E - NADH-quinone oxidoreductase subunit 4 protein, length: 409 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2209
95% 1 7 2794
90% 1 7 2828
70% 1 7 2824
50% 1 7 2801
40% 1 7 2748
30% 1 7 2549
Entity #5: Chains: 5,F - NADH-quinone oxidoreductase subunit 5 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2245
95% 1 7 2846
90% 1 7 2886
70% 1 7 2883
50% 1 7 2859
40% 1 7 2794
30% 1 7 2589
Entity #6: Chains: 6,G - NADH-quinone oxidoreductase subunit 6 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2254
95% 1 7 2855
90% 1 7 2895
70% 1 7 2892
50% 1 7 2865
40% 1 7 2801
30% 1 7 2597
Entity #7: Chains: 9,O - NADH-quinone oxidoreductase subunit 9 protein, length: 182 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2251
95% 1 7 2853
90% 1 7 2893
70% 1 7 2890
50% 1 7 2863
40% 1 7 2799
30% 1 7 2595
Entity #8: Chains: 7,I - NADH-quinone oxidoreductase subunit 15 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2274
95% 1 7 2871
90% 1 7 2911
70% 1 7 2913
50% 1 7 2882
40% 1 7 2814
30% 1 7 2612
Entity #9: Chains: W,X - Putative uncharacterized protein TTHA1528 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 17829
95% 3 3 15496
90% 3 3 15112
70% 3 3 14034
50% 3 3 12285
40% 3 3 11010
30% 3 3 9481
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.