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An Information Portal to 110790 Biological Macromolecular Structures

Crystal structure of the entire respiratory complex I from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4HEA
Sequence Clusters for the Sequence Entities in PDB 4HEA
Entity #1: Chains: 1,B - NADH-quinone oxidoreductase subunit 1 protein, length: 438 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2292
95% 1 7 2898
90% 1 7 2941
70% 1 7 2947
50% 1 7 2906
40% 1 7 2835
30% 1 7 2646
Entity #10: Chains: A,P - NADH-quinone oxidoreductase subunit 7 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 18851
95% 1 2 16274
90% 1 2 15865
70% 1 2 14736
50% 1 2 12907
40% 1 2 11579
30% 1 2 9966
Entity #11: Chains: J,R - NADH-quinone oxidoreductase subunit 10 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 17609
95% 1 2 15379
90% 1 2 15003
70% 1 2 13979
50% 1 2 12259
40% 1 2 10981
30% 1 2 9447
Entity #12: Chains: K,S - NADH-quinone oxidoreductase subunit 11 protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 19260
95% 1 2 16578
90% 1 2 16152
70% 1 2 14983
50% 1 2 13127
40% 1 2 11785
30% 2 3 7154
Entity #13: Chains: L,T - NADH-quinone oxidoreductase subunit 12 protein, length: 606 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 13177
95% 1 2 12354
90% 1 2 12148
70% 1 2 11474
50% 1 2 10300
40% 2 3 6998
30% 2 4 5722
Entity #14: Chains: M,U - NADH-quinone oxidoreductase subunit 13 protein, length: 469 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 13687
95% 1 2 12667
90% 1 2 12449
70% 1 2 11729
50% 1 2 10490
40% 1 2 9551
30% 2 3 6268
Entity #15: Chains: N,V - NADH-quinone oxidoreductase subunit 14 protein, length: 427 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 13998
95% 1 2 12878
90% 1 2 12652
70% 1 2 11910
50% 1 2 10617
40% 1 2 9653
30% 2 3 6290
Entity #16: Chains: H,Q - NADH-quinone oxidoreductase subunit 8 protein, length: 365 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 14597
95% 1 2 13264
90% 1 2 13027
70% 1 2 12240
50% 1 2 10873
40% 1 2 9852
30% 1 2 8579
Entity #2: Chains: 2,C - NADH-quinone oxidoreductase subunit 2 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2343
95% 1 7 2966
90% 1 7 3011
70% 1 7 3017
50% 1 7 2974
40% 1 7 2893
30% 1 7 2702
Entity #3: Chains: 3,D - NADH-quinone oxidoreductase subunit 3 protein, length: 783 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2283
95% 1 7 2885
90% 1 7 2928
70% 1 7 2932
50% 1 7 2887
40% 1 7 2812
30% 1 7 2626
Entity #4: Chains: 4,E - NADH-quinone oxidoreductase subunit 4 protein, length: 409 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2296
95% 1 7 2904
90% 1 7 2947
70% 1 7 2951
50% 1 7 2909
40% 1 8 2651
30% 1 8 2486
Entity #5: Chains: 5,F - NADH-quinone oxidoreductase subunit 5 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2336
95% 1 7 2958
90% 1 7 3003
70% 1 7 3009
50% 1 7 2969
40% 1 7 2887
30% 1 7 2694
Entity #6: Chains: 6,G - NADH-quinone oxidoreductase subunit 6 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2344
95% 1 7 2967
90% 1 7 3012
70% 1 7 3018
50% 1 7 2975
40% 1 7 2894
30% 1 7 2703
Entity #7: Chains: 9,O - NADH-quinone oxidoreductase subunit 9 protein, length: 182 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2341
95% 1 7 2965
90% 1 7 3010
70% 1 7 3016
50% 1 7 2973
40% 1 7 2892
30% 1 7 2701
Entity #8: Chains: 7,I - NADH-quinone oxidoreductase subunit 15 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2365
95% 1 7 2986
90% 1 7 3029
70% 1 7 3039
50% 1 7 2992
40% 1 7 2907
30% 1 7 2717
Entity #9: Chains: W,X - Putative uncharacterized protein TTHA1528 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 18529
95% 3 3 16068
90% 3 3 15668
70% 3 3 14569
50% 3 3 12762
40% 3 3 11442
30% 3 3 9840
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.