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An Information Portal to 105339 Biological Macromolecular Structures

Crystal structure of the entire respiratory complex I from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4HEA
Sequence Clusters for the Sequence Entities in PDB 4HEA
Entity #1: Chains: 1,B - NADH-quinone oxidoreductase subunit 1 protein, length: 438 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2157
95% 1 7 2729
90% 1 7 2760
70% 1 7 2761
50% 1 7 2756
40% 1 7 2709
30% 1 7 2518
Entity #10: Chains: A,P - NADH-quinone oxidoreductase subunit 7 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 17844
95% 1 2 15471
90% 1 2 15083
70% 1 2 13994
50% 1 2 12271
40% 1 2 11004
30% 1 2 9502
Entity #11: Chains: J,R - NADH-quinone oxidoreductase subunit 10 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 16647
95% 1 2 14611
90% 1 2 14258
70% 1 2 13272
50% 1 2 11653
40% 1 2 10433
30% 1 2 9002
Entity #12: Chains: K,S - NADH-quinone oxidoreductase subunit 11 protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 18238
95% 1 2 15763
90% 1 2 15361
70% 1 2 14240
50% 1 2 12490
40% 1 2 11210
30% 2 3 6866
Entity #13: Chains: L,T - NADH-quinone oxidoreductase subunit 12 protein, length: 606 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 12414
95% 1 2 11751
90% 1 2 11566
70% 1 2 10935
50% 1 2 9830
40% 2 3 6676
30% 2 3 5960
Entity #14: Chains: M,U - NADH-quinone oxidoreductase subunit 13 protein, length: 469 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 12885
95% 1 2 12044
90% 1 2 11847
70% 1 2 11171
50% 1 2 10009
40% 1 2 9108
30% 2 3 6008
Entity #15: Chains: N,V - NADH-quinone oxidoreductase subunit 14 protein, length: 427 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 13180
95% 1 2 12239
90% 1 2 12034
70% 1 2 11336
50% 1 2 10120
40% 1 2 9193
30% 2 3 6029
Entity #16: Chains: H,Q - NADH-quinone oxidoreductase subunit 8 protein, length: 365 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 13756
95% 1 2 12610
90% 1 2 12395
70% 1 2 11651
50% 1 2 10361
40% 1 2 9379
30% 1 2 8197
Entity #2: Chains: 2,C - NADH-quinone oxidoreductase subunit 2 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2204
95% 1 7 2792
90% 1 7 2831
70% 1 7 2832
50% 1 7 2820
40% 1 7 2764
30% 1 7 2567
Entity #3: Chains: 3,D - NADH-quinone oxidoreductase subunit 3 protein, length: 783 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2148
95% 1 7 2719
90% 1 7 2749
70% 1 7 2749
50% 1 7 2740
40% 1 7 2688
30% 1 7 2499
Entity #4: Chains: 4,E - NADH-quinone oxidoreductase subunit 4 protein, length: 409 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2161
95% 1 7 2734
90% 1 7 2766
70% 1 7 2765
50% 1 7 2759
40% 1 7 2712
30% 1 7 2521
Entity #5: Chains: 5,F - NADH-quinone oxidoreductase subunit 5 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2196
95% 1 7 2783
90% 1 7 2822
70% 1 7 2823
50% 1 7 2814
40% 1 7 2757
30% 1 7 2559
Entity #6: Chains: 6,G - NADH-quinone oxidoreductase subunit 6 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2205
95% 1 7 2793
90% 1 7 2832
70% 1 7 2833
50% 1 7 2821
40% 1 7 2765
30% 1 7 2568
Entity #7: Chains: 9,O - NADH-quinone oxidoreductase subunit 9 protein, length: 182 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2202
95% 1 7 2791
90% 1 7 2830
70% 1 7 2831
50% 1 7 2819
40% 1 7 2763
30% 1 7 2566
Entity #8: Chains: 7,I - NADH-quinone oxidoreductase subunit 15 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2226
95% 1 7 2810
90% 1 7 2849
70% 1 7 2854
50% 1 7 2838
40% 1 7 2778
30% 1 7 2583
Entity #9: Chains: W,X - Putative uncharacterized protein TTHA1528 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 17532
95% 3 3 15277
90% 3 3 14900
70% 3 3 13843
50% 3 3 12137
40% 3 3 10875
30% 3 3 9384
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.