Sequence Similarity Clusters for the Entities in PDB 4HEA

Entity #1 | Chains: 1,B
NADH-quinone oxidoreductase subunit 1 protein, length: 438 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 2930
95 % 1 7 3649 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 1 7 3698
70 % 1 7 3657
50 % 1 7 3560
40 % 1 17 2060
30 % 1 17 1991
Entity #10 | Chains: A,P
NADH-quinone oxidoreductase subunit 7 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23384
95 % 1 2 20027 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 1 2 19477
70 % 1 2 17917
50 % 1 2 15564
40 % 1 2 13871
30 % 1 2 11867
Entity #11 | Chains: J,R
NADH-quinone oxidoreductase subunit 10 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21908
95 % 1 2 18957 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 2 18457
70 % 1 2 17055
50 % 1 2 14824
40 % 1 2 13199
30 % 1 2 11299
Entity #12 | Chains: K,S
NADH-quinone oxidoreductase subunit 11 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23893
95 % 1 2 20401 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 2 19830
70 % 1 2 18215
50 % 1 2 15822
40 % 1 2 14109
30 % 2 3 8602
Entity #13 | Chains: L,T
NADH-quinone oxidoreductase subunit 12 protein, length: 606 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 16546
95 % 1 2 15369 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 2 15081
70 % 1 2 14163
50 % 1 2 12565
40 % 2 3 8534
30 % 2 4 6901
Entity #14 | Chains: M,U
NADH-quinone oxidoreductase subunit 13 protein, length: 469 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 17203
95 % 1 2 15758 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 1 2 15458
70 % 1 2 14478
50 % 1 2 12801
40 % 1 2 11582
30 % 2 3 7582
Entity #15 | Chains: N,V
NADH-quinone oxidoreductase subunit 14 protein, length: 427 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 17573
95 % 1 2 16003 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 2 15693
70 % 1 2 14681
50 % 1 2 12941
40 % 1 2 11696
30 % 2 3 7604
Entity #16 | Chains: H,Q
NADH-quinone oxidoreductase subunit 8 protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 18284
95 % 1 2 16453 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.5
PDBFlex
90 % 1 2 16125
70 % 1 2 15057
50 % 1 2 13237
40 % 1 2 11919
30 % 1 2 10312
Entity #2 | Chains: 2,C
NADH-quinone oxidoreductase subunit 2 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 2994
95 % 1 7 3736 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 1 7 3783
70 % 1 7 3736
50 % 1 7 3643
40 % 1 7 3514
30 % 1 7 3282
Entity #3 | Chains: 3,D
NADH-quinone oxidoreductase subunit 3 protein, length: 783 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 2916
95 % 1 7 3625 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 1 7 3673
70 % 1 7 3633
50 % 1 7 3537
40 % 1 7 3414
30 % 1 7 3189
Entity #4 | Chains: 4,E
NADH-quinone oxidoreductase subunit 4 protein, length: 409 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 2934
95 % 1 7 3658 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.4
PDBFlex
90 % 1 7 3708
70 % 1 7 3664
50 % 1 7 3566
40 % 1 18 1998
30 % 1 18 1936
Entity #5 | Chains: 5,F
NADH-quinone oxidoreductase subunit 5 protein, length: 207 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 2986
95 % 1 7 3722 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.4
PDBFlex
90 % 1 7 3770
70 % 1 7 3724
50 % 1 7 3634
40 % 1 7 3504
30 % 1 7 3271
Entity #6 | Chains: 6,G
NADH-quinone oxidoreductase subunit 6 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 2995
95 % 1 7 3737 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 0.9
PDBFlex
90 % 1 7 3784
70 % 1 7 3737
50 % 1 7 3644
40 % 1 7 3515
30 % 1 7 3283
Entity #7 | Chains: 9,O
NADH-quinone oxidoreductase subunit 9 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 2993
95 % 1 7 3734 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 1 7 3781
70 % 1 7 3734
50 % 1 7 3642
40 % 1 7 3513
30 % 1 7 3281
Entity #8 | Chains: 7,I
NADH-quinone oxidoreductase subunit 15 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 3019
95 % 1 7 3759 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 1 7 3803
70 % 1 7 3760
50 % 1 7 3672
40 % 1 7 3538
30 % 1 7 3309
Entity #9 | Chains: W,X
Putative uncharacterized protein TTHA1528 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 23014
95 % 3 3 19774 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 3 3 19238
70 % 3 3 17730
50 % 3 3 15405
40 % 3 3 13722
30 % 3 3 11736

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.