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Crystal structure of the entire respiratory complex I from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4HEA
Sequence Clusters for the Sequence Entities in PDB 4HEA
Entity #1: Chains: 1,B - NADH-quinone oxidoreductase subunit 1 protein, length: 438 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2034
95% 1 7 2593
90% 1 7 2629
70% 1 7 2638
50% 1 7 2667
40% 1 7 2633
30% 1 7 2456
Entity #10: Chains: A,P - NADH-quinone oxidoreductase subunit 7 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 17389
95% 1 2 15103
90% 1 2 14736
70% 1 2 13688
50% 1 2 11999
40% 1 2 10759
30% 1 2 9306
Entity #11: Chains: J,R - NADH-quinone oxidoreductase subunit 10 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 16215
95% 1 2 14256
90% 1 2 13920
70% 1 2 12971
50% 1 2 11385
40% 1 2 10192
30% 1 2 8806
Entity #12: Chains: K,S - NADH-quinone oxidoreductase subunit 11 protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 17775
95% 1 2 15388
90% 1 2 15008
70% 1 2 13929
50% 1 2 12214
40% 1 2 10960
30% 2 3 6732
Entity #13: Chains: L,T - NADH-quinone oxidoreductase subunit 12 protein, length: 606 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 12089
95% 1 2 11460
90% 1 2 11283
70% 1 2 10681
50% 1 2 9593
40% 2 3 6533
30% 2 3 5845
Entity #14: Chains: M,U - NADH-quinone oxidoreductase subunit 13 protein, length: 469 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 12550
95% 1 2 11748
90% 1 2 11562
70% 1 2 10916
50% 1 2 9773
40% 1 2 8897
30% 2 3 5892
Entity #15: Chains: N,V - NADH-quinone oxidoreductase subunit 14 protein, length: 427 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 12838
95% 1 2 11943
90% 1 2 11748
70% 1 2 11077
50% 1 2 9882
40% 1 2 8982
30% 2 3 5912
Entity #16: Chains: H,Q - NADH-quinone oxidoreductase subunit 8 protein, length: 365 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 13394
95% 1 2 12304
90% 1 2 12100
70% 1 2 11386
50% 1 2 10117
40% 1 2 9163
30% 1 2 8020
Entity #2: Chains: 2,C - NADH-quinone oxidoreductase subunit 2 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2082
95% 1 7 2651
90% 1 7 2699
70% 1 7 2708
50% 1 7 2731
40% 1 7 2684
30% 1 7 2502
Entity #3: Chains: 3,D - NADH-quinone oxidoreductase subunit 3 protein, length: 783 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2025
95% 1 7 2587
90% 1 7 2622
70% 1 7 2630
50% 1 7 2653
40% 1 7 2616
30% 1 7 2441
Entity #4: Chains: 4,E - NADH-quinone oxidoreductase subunit 4 protein, length: 409 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2036
95% 1 7 2596
90% 1 7 2633
70% 1 7 2641
50% 1 7 2669
40% 1 7 2635
30% 1 7 2459
Entity #5: Chains: 5,F - NADH-quinone oxidoreductase subunit 5 protein, length: 207 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2071
95% 1 7 2640
90% 1 7 2687
70% 1 7 2696
50% 1 7 2722
40% 1 7 2676
30% 1 7 2494
Entity #6: Chains: 6,G - NADH-quinone oxidoreductase subunit 6 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2083
95% 1 7 2652
90% 1 7 2700
70% 1 7 2709
50% 1 7 2732
40% 1 7 2685
30% 1 7 2503
Entity #7: Chains: 9,O - NADH-quinone oxidoreductase subunit 9 protein, length: 182 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2079
95% 1 7 2650
90% 1 7 2697
70% 1 7 2706
50% 1 7 2728
40% 1 7 2681
30% 1 7 2500
Entity #8: Chains: 7,I - NADH-quinone oxidoreductase subunit 15 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 2104
95% 1 7 2667
90% 1 7 2717
70% 1 7 2733
50% 1 7 2753
40% 1 7 2698
30% 1 7 2513
Entity #9: Chains: W,X - Putative uncharacterized protein TTHA1528 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 17080
95% 3 3 14911
90% 3 3 14555
70% 3 3 13537
50% 3 3 11866
40% 3 3 10631
30% 3 3 9187
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.