Sequence Similarity Clusters for the Entities in PDB 4HEA

Entity #1 | Chains: 1,B
NADH-quinone oxidoreductase subunit 1 protein, length: 438 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 2984
95 % 1 7 3694 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 1 7 3748
70 % 1 7 3695
50 % 1 7 3593
40 % 1 17 2086
30 % 1 17 2009
Entity #10 | Chains: A,P
NADH-quinone oxidoreductase subunit 7 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23633
95 % 1 2 20222 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 1 2 19672
70 % 1 2 18099
50 % 1 2 15709
40 % 1 2 13995
30 % 1 2 11976
Entity #11 | Chains: J,R
NADH-quinone oxidoreductase subunit 10 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22154
95 % 1 2 19147 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 2 18646
70 % 1 2 17236
50 % 1 2 14968
40 % 1 2 13323
30 % 1 2 11408
Entity #12 | Chains: K,S
NADH-quinone oxidoreductase subunit 11 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24146
95 % 1 2 20600 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 1 2 20029
70 % 1 2 18399
50 % 1 2 15968
40 % 1 2 14236
30 % 2 3 8691
Entity #13 | Chains: L,T
NADH-quinone oxidoreductase subunit 12 protein, length: 606 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 16743
95 % 1 2 15536 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 1 2 15249
70 % 1 2 14319
50 % 1 2 12695
40 % 2 3 8616
30 % 2 4 6970
Entity #14 | Chains: M,U
NADH-quinone oxidoreductase subunit 13 protein, length: 469 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 17401
95 % 1 2 15923 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 2 15624
70 % 1 2 14633
50 % 1 2 12930
40 % 1 2 11692
30 % 2 3 7658
Entity #15 | Chains: N,V
NADH-quinone oxidoreductase subunit 14 protein, length: 427 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 17775
95 % 1 2 16170 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 2 15862
70 % 1 2 14838
50 % 1 2 13072
40 % 1 2 11808
30 % 2 3 7680
Entity #16 | Chains: H,Q
NADH-quinone oxidoreductase subunit 8 protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 18492
95 % 1 2 16621 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.5
PDBFlex
90 % 1 2 16295
70 % 1 2 15213
50 % 1 2 13366
40 % 1 2 12031
30 % 1 2 10410
Entity #2 | Chains: 2,C
NADH-quinone oxidoreductase subunit 2 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 3046
95 % 1 7 3783 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 1 7 3836
70 % 1 7 3778
50 % 1 7 3677
40 % 1 7 3547
30 % 1 7 3315
Entity #3 | Chains: 3,D
NADH-quinone oxidoreductase subunit 3 protein, length: 783 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 2971
95 % 1 7 3670 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.4
PDBFlex
90 % 1 7 3723
70 % 1 7 3670
50 % 1 7 3570
40 % 1 7 3444
30 % 1 7 3218
Entity #4 | Chains: 4,E
NADH-quinone oxidoreductase subunit 4 protein, length: 409 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 2987
95 % 1 7 3702 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.2
PDBFlex
90 % 1 7 3756
70 % 1 7 3701
50 % 1 7 3599
40 % 1 18 2024
30 % 1 18 1952
Entity #5 | Chains: 5,F
NADH-quinone oxidoreductase subunit 5 protein, length: 207 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 3038
95 % 1 7 3767 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.3
PDBFlex
90 % 1 7 3821
70 % 1 7 3764
50 % 1 7 3667
40 % 1 7 3536
30 % 1 7 3303
Entity #6 | Chains: 6,G
NADH-quinone oxidoreductase subunit 6 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 3047
95 % 1 7 3784 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 1 7 3837
70 % 1 7 3779
50 % 1 7 3678
40 % 1 7 3548
30 % 1 7 3316
Entity #7 | Chains: 9,O
NADH-quinone oxidoreductase subunit 9 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 3045
95 % 1 7 3781 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 1 7 3834
70 % 1 7 3776
50 % 1 7 3676
40 % 1 7 3546
30 % 1 7 3314
Entity #8 | Chains: 7,I
NADH-quinone oxidoreductase subunit 15 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 3072
95 % 1 7 3807 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 7 3858
70 % 1 7 3803
50 % 1 7 3705
40 % 1 7 3569
30 % 1 7 3339
Entity #9 | Chains: W,X
Putative uncharacterized protein TTHA1528 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 23260
95 % 3 3 19969 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 3 3 19432
70 % 3 3 17912
50 % 3 3 15549
40 % 3 3 13846
30 % 3 3 11845

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.