Sequence Similarity Clusters for the Entities in PDB 4HE8

Entity #1 | Chains: A,B
NADH-quinone oxidoreductase subunit 7 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23722
95 % 2 2 21102 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 2 2 20477
70 % 2 2 18778
50 % 2 2 16267
40 % 2 2 14406
30 % 2 15 3238
Entity #2 | Chains: D,J
NADH-quinone oxidoreductase subunit 10 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21492
95 % 2 2 19339 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 18813
70 % 2 2 17317
50 % 2 2 15088
40 % 2 2 13417
30 % 2 2 11276
Entity #3 | Chains: E,K
NADH-quinone oxidoreductase subunit 11 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 17593
95 % 2 2 17249 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 2 16849
70 % 2 2 15646
50 % 2 2 15089
40 % 2 2 13418
30 % 3 3 8292
Entity #4 | Chains: F,L
NADH-quinone oxidoreductase subunit 12 protein, length: 606 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23723
95 % 2 2 21103 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 2 20478
70 % 2 2 18779
50 % 2 2 16268
40 % 3 3 10170
30 % 3 3 8673
Entity #5 | Chains: G,M
NADH-quinone oxidoreductase subunit 13 protein, length: 469 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23725
95 % 2 2 21105 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 2 20480
70 % 2 2 18781
50 % 2 2 16270
40 % 2 2 14408
30 % 3 3 8674
Entity #6 | Chains: I,N
NADH-quinone oxidoreductase subunit 14 protein, length: 427 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23724
95 % 2 2 21104 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 2 20479
70 % 2 2 18780
50 % 2 2 16269
40 % 2 2 14407
30 % 2 2 12086
Entity #7 | Chains: C,H
NADH-quinone oxidoreductase subunit 8 protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 18859
95 % 2 2 17248 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.5
PDBFlex
90 % 2 2 16848
70 % 2 2 15645
50 % 2 2 15087
40 % 2 2 13416
30 % 2 2 11275

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures