Sequence Similarity Clusters for the Entities in PDB 4HE8

Entity #1 | Chains: A,B
NADH-quinone oxidoreductase subunit 7 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23633
95 % 2 2 20222 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 2 2 19672
70 % 2 2 18099
50 % 2 2 15709
40 % 2 2 13995
30 % 2 2 11976
Entity #2 | Chains: D,J
NADH-quinone oxidoreductase subunit 10 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22154
95 % 2 2 19147 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 18646
70 % 2 2 17236
50 % 2 2 14968
40 % 2 2 13323
30 % 2 2 11408
Entity #3 | Chains: E,K
NADH-quinone oxidoreductase subunit 11 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24146
95 % 2 2 20600 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 2 2 20029
70 % 2 2 18399
50 % 2 2 15968
40 % 2 2 14236
30 % 3 3 8691
Entity #4 | Chains: F,L
NADH-quinone oxidoreductase subunit 12 protein, length: 606 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 16743
95 % 2 2 15536 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 2 15249
70 % 2 2 14319
50 % 2 2 12695
40 % 3 3 8616
30 % 3 4 6970
Entity #5 | Chains: G,M
NADH-quinone oxidoreductase subunit 13 protein, length: 469 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 17401
95 % 2 2 15923
90 % 2 2 15624
70 % 2 2 14633
50 % 2 2 12930
40 % 2 2 11692
30 % 3 3 7658
Entity #6 | Chains: I,N
NADH-quinone oxidoreductase subunit 14 protein, length: 427 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 17775
95 % 2 2 16170 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 2 15862
70 % 2 2 14838
50 % 2 2 13072
40 % 2 2 11808
30 % 3 3 7680
Entity #7 | Chains: C,H
NADH-quinone oxidoreductase subunit 8 protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 18492
95 % 2 2 16621 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.5
PDBFlex
90 % 2 2 16295
70 % 2 2 15213
50 % 2 2 13366
40 % 2 2 12031
30 % 2 2 10410

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.