Sequence Similarity Clusters for the Entities in PDB 4HE8

Entity #1 | Chains: A,B
NADH-quinone oxidoreductase subunit 7 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24453
95 % 2 2 20863 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 2 2 20271
70 % 2 2 18628
50 % 2 2 16149
40 % 2 2 14370
30 % 2 2 12291
Entity #2 | Chains: D,J
NADH-quinone oxidoreductase subunit 10 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22957
95 % 2 2 19769 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 19231
70 % 2 2 17753
50 % 2 2 15399
40 % 2 2 13689
30 % 2 2 11711
Entity #3 | Chains: E,K
NADH-quinone oxidoreductase subunit 11 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24977
95 % 2 2 21250 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 2 2 20631
70 % 2 2 18933
50 % 2 2 16413
40 % 2 2 14614
30 % 3 3 8938
Entity #4 | Chains: F,L
NADH-quinone oxidoreductase subunit 12 protein, length: 606 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 17352
95 % 2 2 16025 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 2 15728
70 % 2 2 14749
50 % 2 2 13068
40 % 3 3 8881
30 % 3 4 7173
Entity #5 | Chains: G,M
NADH-quinone oxidoreductase subunit 13 protein, length: 469 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 18034
95 % 2 2 16435
90 % 2 2 16124
70 % 2 2 15076
50 % 2 2 13311
40 % 2 2 12024
30 % 3 3 7884
Entity #6 | Chains: I,N
NADH-quinone oxidoreductase subunit 14 protein, length: 427 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 18432
95 % 2 2 16701 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 2 16379
70 % 2 2 15293
50 % 2 2 13462
40 % 2 2 12149
30 % 3 3 7906
Entity #7 | Chains: C,H
NADH-quinone oxidoreductase subunit 8 protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 19168
95 % 2 2 17163 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.5
PDBFlex
90 % 2 2 16823
70 % 2 2 15676
50 % 2 2 13762
40 % 2 2 12378
30 % 2 2 10707

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures