Sequence Similarity Clusters for the Entities in PDB 4HE8

Entity #1 | Chains: A,B
NADH-quinone oxidoreductase subunit 7 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24117
95 % 2 2 20595 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 2 2 20019
70 % 2 2 18407
50 % 2 2 15967
40 % 2 2 14215
30 % 2 2 12162
Entity #2 | Chains: D,J
NADH-quinone oxidoreductase subunit 10 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22623
95 % 2 2 19504 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 18981
70 % 2 2 17535
50 % 2 2 15218
40 % 2 2 13535
30 % 2 2 11584
Entity #3 | Chains: E,K
NADH-quinone oxidoreductase subunit 11 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24641
95 % 2 2 20980 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 2 2 20378
70 % 2 2 18711
50 % 2 2 16231
40 % 2 2 14459
30 % 3 3 8826
Entity #4 | Chains: F,L
NADH-quinone oxidoreductase subunit 12 protein, length: 606 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 17092
95 % 2 2 15813 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 2 15524
70 % 2 2 14565
50 % 2 2 12909
40 % 3 3 8768
30 % 3 4 7083
Entity #5 | Chains: G,M
NADH-quinone oxidoreductase subunit 13 protein, length: 469 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 17763
95 % 2 2 16212
90 % 2 2 15909
70 % 2 2 14884
50 % 2 2 13144
40 % 2 2 11880
30 % 3 3 7790
Entity #6 | Chains: I,N
NADH-quinone oxidoreductase subunit 14 protein, length: 427 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 18156
95 % 2 2 16474 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 2 16160
70 % 2 2 15101
50 % 2 2 13294
40 % 2 2 12004
30 % 3 3 7812
Entity #7 | Chains: C,H
NADH-quinone oxidoreductase subunit 8 protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 18889
95 % 2 2 16932 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.5
PDBFlex
90 % 2 2 16601
70 % 2 2 15481
50 % 2 2 13592
40 % 2 2 12230
30 % 2 2 10581

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures