Sequence Similarity Clusters for the Entities in PDB 4HE8

Entity #1 | Chains: A,B
NADH-quinone oxidoreductase subunit 7 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23384
95 % 2 2 20027 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 2 2 19477
70 % 2 2 17917
50 % 2 2 15564
40 % 2 2 13871
30 % 2 2 11867
Entity #2 | Chains: D,J
NADH-quinone oxidoreductase subunit 10 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21908
95 % 2 2 18957 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 18457
70 % 2 2 17055
50 % 2 2 14824
40 % 2 2 13199
30 % 2 2 11299
Entity #3 | Chains: E,K
NADH-quinone oxidoreductase subunit 11 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23893
95 % 2 2 20401 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 2 19830
70 % 2 2 18215
50 % 2 2 15822
40 % 2 2 14109
30 % 3 3 8602
Entity #4 | Chains: F,L
NADH-quinone oxidoreductase subunit 12 protein, length: 606 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 16546
95 % 2 2 15369
90 % 2 2 15081
70 % 2 2 14163
50 % 2 2 12565
40 % 3 3 8534
30 % 3 4 6901
Entity #5 | Chains: G,M
NADH-quinone oxidoreductase subunit 13 protein, length: 469 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 17203
95 % 2 2 15758 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 2 15458
70 % 2 2 14478
50 % 2 2 12801
40 % 2 2 11582
30 % 3 3 7582
Entity #6 | Chains: I,N
NADH-quinone oxidoreductase subunit 14 protein, length: 427 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 17573
95 % 2 2 16003 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 2 15693
70 % 2 2 14681
50 % 2 2 12941
40 % 2 2 11696
30 % 3 3 7604
Entity #7 | Chains: C,H
NADH-quinone oxidoreductase subunit 8 protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 18284
95 % 2 2 16453 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.5
PDBFlex
90 % 2 2 16125
70 % 2 2 15057
50 % 2 2 13237
40 % 2 2 11919
30 % 2 2 10312

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.