Sequence Similarity Clusters for the Entities in PDB 4HDA

Entity #1 | Chains: A,B
NAD-dependent protein deacylase sirtuin-5, mitochondrial protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 10 2145
95 % 10 10 2733 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 10 10 2782
70 % 12 22 1160
50 % 12 22 1205
40 % 37 50 649
30 % 95 118 243
Entity #2 | Chains: F
Fluor-de-Lys peptide protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures