Sequence Similarity Clusters for the Entities in PDB 4HDA

Entity #1 | Chains: A,B
NAD-dependent protein deacylase sirtuin-5, mitochondrial protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 2570
95 % 9 9 3206 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.2
PDBFlex
90 % 9 9 3251
70 % 10 18 1436
50 % 10 18 1493
40 % 35 46 729
30 % 93 111 254
Entity #2 | Chains: F
Fluor-de-Lys peptide protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.