Sequence Similarity Clusters for the Entities in PDB 4HDA

Entity #1 | Chains: A,B
NAD-dependent protein deacylase sirtuin-5, mitochondrial protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 10 2083
95 % 10 10 2683 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 10 10 2733
70 % 12 22 1144
50 % 12 22 1186
40 % 37 50 639
30 % 95 117 244
Entity #2 | Chains: F
Fluor-de-Lys peptide protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures