Sequence Similarity Clusters for the Entities in PDB 4HD8

Entity #1 | Chains: A
NAD-dependent protein deacetylase sirtuin-3, mitochondrial protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 27 775
95 % 15 30 839 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.5
PDBFlex
90 % 15 30 867
70 % 15 30 905
50 % 35 53 514
40 % 45 67 472
30 % 79 126 249
Entity #2 | Chains: F
Fluor-de-Lys peptide protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures