Sequence Similarity Clusters for the Entities in PDB 4HCR

Entity #1 | Chains: H,M
PF-547659 heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41064
95 % 1 1 31485 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 30333
70 % 698 2429 2
50 % 1446 5021 1
40 % 1446 5021 1
30 % 1649 5951 1
Entity #2 | Chains: L,N
PF-547659 light chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41860
95 % 1 1 31945 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 225 791 2
70 % 706 2479 1
50 % 1447 5021 1
40 % 1447 5021 1
30 % 1650 5951 1
Entity #3 | Chains: A,B
Mucosal addressin cell adhesion molecule 1 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 16039
95 % 4 6 8133 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 2.6
PDBFlex
90 % 4 6 8064
70 % 4 6 7813
50 % 4 6 7201
40 % 4 6 6687
30 % 4 6 5970

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures