Sequence Similarity Clusters for the Entities in PDB 4HCR

Entity #1 | Chains: H,M
PF-547659 heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39363
95 % 1 1 30258 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 29170
70 % 629 2244 2
50 % 1304 4633 1
40 % 1304 4633 1
30 % 1458 5461 1
Entity #2 | Chains: L,N
PF-547659 light chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 40125
95 % 1 1 30700
90 % 184 701 3
70 % 636 2287 1
50 % 1305 4633 1
40 % 1305 4633 1
30 % 1459 5461 1
Entity #3 | Chains: A,B
Mucosal addressin cell adhesion molecule 1 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 15255
95 % 4 6 7765 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 2.2
PDBFlex
90 % 4 6 7715
70 % 4 6 7497
50 % 4 6 6898
40 % 4 6 6408
30 % 4 6 5721

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.