Sequence Similarity Clusters for the Entities in PDB 4HCR

Entity #1 | Chains: H,M
PF-547659 heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40218
95 % 1 1 30885 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 29770
70 % 661 2342 2
50 % 1371 4843 1
40 % 1371 4843 1
30 % 1534 5705 1
Entity #2 | Chains: L,N
PF-547659 light chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40999
95 % 1 1 31337 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 205 746 3
70 % 669 2392 1
50 % 1372 4843 1
40 % 1372 4843 1
30 % 1535 5705 1
Entity #3 | Chains: A,B
Mucosal addressin cell adhesion molecule 1 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 15642
95 % 4 6 7949 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 2.6
PDBFlex
90 % 4 6 7888
70 % 4 6 7648
50 % 4 6 7046
40 % 4 6 6547
30 % 4 6 5840

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures