Sequence Similarity Clusters for the Entities in PDB 4HCR

Entity #1 | Chains: H,M
PF-547659 heavy chain protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40970
95 % 1 1 34508 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 32989
70 % 712 2511 2
50 % 1477 5180 1
40 % 1732 5834 1
30 % 2120 7269 1
Entity #2 | Chains: L,N
PF-547659 light chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31957
95 % 1 1 27673 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 235 780 2
70 % 719 2553 1
50 % 1478 5180 1
40 % 1733 5834 1
30 % 2121 7269 1
Entity #3 | Chains: A,B
Mucosal addressin cell adhesion molecule 1 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 15580
95 % 4 6 8390 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 2.4
PDBFlex
90 % 4 6 8322
70 % 4 6 7901
50 % 4 6 7001
40 % 4 6 6476
30 % 4 6 5658

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures