Sequence Similarity Clusters for the Entities in PDB 4HC9

Entity #1 | Chains: A
Trans-acting T-cell-specific transcription factor GATA-3 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 17289
95 % 1 3 16008 Flexibility: High
Max RMSD: 15.6, Avg RMSD: 11.6
PDBFlex
90 % 1 3 15679
70 % 1 5 9843
50 % 1 5 8876
40 % 1 5 8050
30 % 1 5 6970
Entity #2 | Chains: Y
DNA (5'-D(*TP*TP*CP*CP*TP*AP*AP*AP*TP*CP*AP*GP*AP*GP*AP*TP*AP*AP*CP*C)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: Z
DNA (5'-D(*AP*AP*GP*GP*TP*TP*AP*TP*CP*TP*CP*TP*GP*AP*TP*TP*TP*AP*GP*G)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures