Sequence Similarity Clusters for the Entities in PDB 4HC9

Entity #1 | Chains: A
Trans-acting T-cell-specific transcription factor GATA-3 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 23742
95 % 1 3 20317 Flexibility: High
Max RMSD: 15.6, Avg RMSD: 11.6
PDBFlex
90 % 1 3 19758
70 % 1 5 10124
50 % 1 5 9166
40 % 1 5 8388
30 % 1 5 7390
Entity #2 | Chains: Y
DNA (5'-D(*TP*TP*CP*CP*TP*AP*AP*AP*TP*CP*AP*GP*AP*GP*AP*TP*AP*AP*CP*C)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: Z
DNA (5'-D(*AP*AP*GP*GP*TP*TP*AP*TP*CP*TP*CP*TP*GP*AP*TP*TP*TP*AP*GP*G)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures