Sequence Similarity Clusters for the Entities in PDB 4HC1

Entity #1 | Chains: A,B
Mucosal addressin cell adhesion molecule 1 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23184
95 % 6 6 8336 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 2.6
PDBFlex
90 % 6 6 8262
70 % 6 6 7845
50 % 6 6 6959
40 % 6 6 6434
30 % 6 6 5624
Entity #2 | Chains: H,M
10G3 heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 35704
95 % 1 1 30459
90 % 1 1 29217
70 % 1648 2478 2
50 % 3408 5107 1
40 % 3866 5756 1
30 % 4812 7175 1
Entity #3 | Chains: L,N
10G3 light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35703
95 % 1 1 30458 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 29 31 1163
70 % 1680 2519 1
50 % 3409 5107 1
40 % 3867 5756 1
30 % 4813 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures