Sequence Similarity Clusters for the Entities in PDB 4HC1

Entity #1 | Chains: A,B
Mucosal addressin cell adhesion molecule 1 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22061
95 % 6 6 8002 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 2.6
PDBFlex
90 % 6 6 7939
70 % 6 6 7696
50 % 6 6 7087
40 % 6 6 6586
30 % 6 6 5879
Entity #2 | Chains: H,M
10G3 heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41183
95 % 1 1 31462
90 % 1 1 30241
70 % 1589 2376 2
50 % 3297 4913 1
40 % 3297 4913 1
30 % 3861 5780 1
Entity #3 | Chains: L,N
10G3 light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41825
95 % 1 1 31827 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 28 30 1156
70 % 1627 2426 1
50 % 3298 4913 1
40 % 3298 4913 1
30 % 3862 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures