Sequence Similarity Clusters for the Entities in PDB 4HBJ

Entity #1 | Chains: L
Reaction center protein L chain protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 420
95 % 48 97 344 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 48 97 370
70 % 48 97 407
50 % 64 126 348
40 % 64 126 374
30 % 64 126 382
Entity #2 | Chains: M
Reaction center protein M chain protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54250
95 % 48 97 343 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.8
PDBFlex
90 % 48 97 369
70 % 48 97 405
50 % 64 126 347
40 % 64 126 373
30 % 64 126 380
Entity #3 | Chains: H
Reaction center protein H chain protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 96 248
95 % 48 97 345 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 48 97 371
70 % 48 97 408
50 % 48 97 481
40 % 64 126 375
30 % 64 126 383

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.