Sequence Similarity Clusters for the Entities in PDB 4HB4

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 57 504
95 % 22 76 339 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 5.0
PDBFlex
90 % 22 80 340
70 % 23 83 370
50 % 23 83 440
40 % 24 84 471
30 % 384 887 11
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 12 6073
95 % 12 32 1897 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 32 1939
70 % 12 32 1954
50 % 12 33 1877
40 % 12 33 1860
30 % 12 33 1806
Entity #3 | Chains: C
Exportin-1 protein, length: 1023 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65630
95 % 13 37 1552 Flexibility: Low
Max RMSD: 6.9, Avg RMSD: 1.0
PDBFlex
90 % 13 37 1577
70 % 13 37 1585
50 % 13 48 1157
40 % 13 48 1144
30 % 13 48 1134

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4HAT 3 C Exportin-1 SEE REMARK 999 4932
2 4WVF 3 C Crm1p 4932
3 4HB2 3 C Exportin-1 SEE REMARK 999 4932
4 4HAW 3 C Exportin-1 SEE REMARK 999 4932
5 4HAZ 3 C Exportin-1 SEE REMARK 999 4932
6 4HAU 3 C Exportin-1 SEE REMARK 999 4932
7 4HAV 3 C Exportin-1 SEE REMARK 999 4932
8 4GMX 3 C Exportin-1 UNP residues 1-1058 4932
9 3M1I 3 C Exportin-1 4932
10 5UWP 3 C Exportin-1 4932
11 5DIF 3 C Exportin-1 4932
12 6CIT 3 C Exportin-1 4932
13 4HB4 3 C Exportin-1 SEE REMARK 999 4932
14 3WYG 2 C Exportin-1 4932
15 3VYC 1 A Exportin-1 4932
16 4GPT 3 C Exportin-1 UNP residues 1-1058 4932
17 5UWI 3 C Exportin-1 4932
18 5UWW 3 C Exportin-1 4932
19 3WYF 3 C, F Exportin-1 4932
20 5UWJ 3 C Exportin-1 4932
21 5DI9 3 C Exportin-1 4932
22 4HB0 3 C Exportin-1 SEE REMARK 999 4932
23 4HAX 1 C Exportin-1 SEE REMARK 999 4932
24 5UWU 3 C Exportin-1 4932
25 5XOJ 2 C Exportin-1 4932
26 5UWH 3 C Exportin-1 4932
27 5DHF 3 C Exportin-1 4932
28 5UWR 3 C Exportin-1 4932
29 5UWQ 3 C Exportin-1 4932
30 4HAY 3 C Exportin-1 SEE REMARK 999 4932
31 5UWT 3 C Exportin-1 4932
32 5UWO 3 C Exportin-1 4932
33 5UWS 3 C Exportin-1,Exportin-1 4932
34 5DH9 3 C Exportin-1 4932
35 5JLJ 3 C Exportin-1 4932
36 5DHA 3 C Exportin-1 4932
37 3GJX 3 A, D Exportin-1 10090
38 5DIS 1 A Exportin-1 UNP residues 5-1058 9606
39 3NBZ 1 A, D Exportin-1 10090
40 4FGV 1 A Chromosome region maintenance 1 (CRM1) or Exportin 1 (Xpo1) 209285
41 4HB3 3 C Exportin-1 SEE REMARK 999 4932
42 3GB8 1 A Exportin-1 9606
43 4HZK 1 A, B CRM1 Nuclear transport receptor 209285
44 3NC0 1 A, D Exportin-1 10090
45 3NC1 2 A Exportin-1 10090
46 3NBY 3 A, D Exportin-1 10090
47 4BSM 1 A EXPORTIN-1 RESIDUES 1-1032 9606
48 4BSN 1 A EXPORTIN-1 LACKS THE C-TERMINAL HELICAL EXTENSION, RESIDUE 1-1032 9606