Sequence Similarity Clusters for the Entities in PDB 4HB4

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 55 506
95 % 21 74 333 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 4.8
PDBFlex
90 % 21 78 337
70 % 22 81 371
50 % 22 81 436
40 % 23 82 460
30 % 361 842 13
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 12 5808
95 % 11 31 1894 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 11 31 1936
70 % 11 31 1950
50 % 11 32 1853
40 % 11 32 1834
30 % 11 32 1777
Entity #3 | Chains: C
Exportin-1 protein, length: 1023 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63464
95 % 12 36 1500
90 % 12 36 1527
70 % 12 36 1538
50 % 12 47 1135
40 % 12 47 1129
30 % 12 47 1122

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4HAT 3 C Exportin-1 SEE REMARK 999 4932
2 4WVF 3 C Crm1p 4932
3 4HB2 3 C Exportin-1 SEE REMARK 999 4932
4 4HAW 3 C Exportin-1 SEE REMARK 999 4932
5 4HAZ 3 C Exportin-1 SEE REMARK 999 4932
6 4HAU 3 C Exportin-1 SEE REMARK 999 4932
7 4HAV 3 C Exportin-1 SEE REMARK 999 4932
8 4GMX 3 C Exportin-1 UNP residues 1-1058 4932
9 3M1I 3 C Exportin-1 4932
10 5UWP 3 C Exportin-1 4932
11 5DIF 3 C Exportin-1 4932
12 4HB4 3 C Exportin-1 SEE REMARK 999 4932
13 3WYG 2 C Exportin-1 4932
14 3VYC 1 A Exportin-1 4932
15 4GPT 3 C Exportin-1 UNP residues 1-1058 4932
16 5UWI 3 C Exportin-1 4932
17 5UWW 3 C Exportin-1 4932
18 3WYF 3 C, F Exportin-1 4932
19 5UWJ 3 C Exportin-1 4932
20 5DI9 3 C Exportin-1 4932
21 4HB0 3 C Exportin-1 SEE REMARK 999 4932
22 4HAX 1 C Exportin-1 SEE REMARK 999 4932
23 5UWU 3 C Exportin-1 4932
24 5XOJ 2 C Exportin-1 4932
25 5UWH 3 C Exportin-1 4932
26 5DHF 3 C Exportin-1 4932
27 5UWR 3 C Exportin-1 4932
28 5UWQ 3 C Exportin-1 4932
29 4HAY 3 C Exportin-1 SEE REMARK 999 4932
30 5UWT 3 C Exportin-1 4932
31 5UWO 3 C Exportin-1 4932
32 5UWS 3 C Exportin-1,Exportin-1 4932
33 5DH9 3 C Exportin-1 4932
34 5JLJ 3 C Exportin-1 4932
35 5DHA 3 C Exportin-1 4932
36 3GJX 3 A, D Exportin-1 10090
37 5DIS 1 A Exportin-1 UNP residues 5-1058 9606
38 3NBZ 1 A, D Exportin-1 10090
39 4FGV 1 A Chromosome region maintenance 1 (CRM1) or Exportin 1 (Xpo1) 209285
40 4HB3 3 C Exportin-1 SEE REMARK 999 4932
41 3GB8 1 A Exportin-1 9606
42 4HZK 1 A, B CRM1 Nuclear transport receptor 209285
43 3NC0 1 A, D Exportin-1 10090
44 3NC1 2 A Exportin-1 10090
45 3NBY 3 A, D Exportin-1 10090
46 4BSM 1 A EXPORTIN-1 RESIDUES 1-1032 9606
47 4BSN 1 A EXPORTIN-1 LACKS THE C-TERMINAL HELICAL EXTENSION, RESIDUE 1-1032 9606