Sequence Similarity Clusters for the Entities in PDB 4HB4

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 57 537
95 % 22 80 337 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 5.0
PDBFlex
90 % 22 84 331
70 % 23 87 364
50 % 23 87 440
40 % 24 88 465
30 % 406 918 11
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 13 5439
95 % 12 36 1714 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 36 1749
70 % 12 36 1769
50 % 12 37 1672
40 % 12 37 1670
30 % 12 37 1634
Entity #3 | Chains: C
Exportin-1 protein, length: 1023 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 17436
95 % 13 41 1444 Flexibility: Low
Max RMSD: 6.9, Avg RMSD: 1.0
PDBFlex
90 % 13 41 1467
70 % 13 41 1481
50 % 13 52 1099
40 % 13 52 1103
30 % 13 52 1091

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4HAT 3 C Exportin-1 SEE REMARK 999 4932
2 4WVF 3 C Crm1p 4932
3 4HB2 3 C Exportin-1 SEE REMARK 999 4932
4 4HAW 3 C Exportin-1 SEE REMARK 999 4932
5 4HAZ 3 C Exportin-1 SEE REMARK 999 4932
6 4HAU 3 C Exportin-1 SEE REMARK 999 4932
7 4HAV 3 C Exportin-1 SEE REMARK 999 4932
8 4GMX 3 C Exportin-1 UNP residues 1-1058 4932
9 3M1I 3 C Exportin-1 4932
10 5UWP 3 C Exportin-1 4932
11 5DIF 3 C Exportin-1 4932
12 6CIT 3 C Exportin-1 4932
13 4HB4 3 C Exportin-1 SEE REMARK 999 4932
14 3WYG 2 C Exportin-1 4932
15 3VYC 1 A Exportin-1 4932
16 4GPT 3 C Exportin-1 UNP residues 1-1058 4932
17 5UWI 3 C Exportin-1 4932
18 5YST 3 C Exportin-1,Exportin-1 lacking C-terminal inhibitory tail,lacking C-terminal inhibitory tail 4932
19 5UWW 3 C Exportin-1 4932
20 3WYF 3 C, F Exportin-1 4932
21 5UWJ 3 C Exportin-1 4932
22 5DI9 3 C Exportin-1 4932
23 4HB0 3 C Exportin-1 SEE REMARK 999 4932
24 4HAX 1 C Exportin-1 SEE REMARK 999 4932
25 5UWU 3 C Exportin-1 4932
26 5XOJ 2 C Exportin-1 4932
27 5UWH 3 C Exportin-1 4932
28 5DHF 3 C Exportin-1 4932
29 5UWR 3 C Exportin-1 4932
30 5UWQ 3 C Exportin-1 4932
31 4HAY 3 C Exportin-1 SEE REMARK 999 4932
32 5YTB 3 C Exportin-1,Exportin-1 4932
33 5UWT 3 C Exportin-1 4932
34 5UWO 3 C Exportin-1 4932
35 5UWS 3 C Exportin-1,Exportin-1 4932
36 5YSU 3 C Exportin-1,Exportin-1 4932
37 5YRO 3 C Exportin-1,Exportin-1 4932
38 5DH9 3 C Exportin-1 4932
39 5JLJ 3 C Exportin-1 4932
40 5DHA 3 C Exportin-1 4932
41 3GJX 3 A, D Exportin-1 10090
42 5DIS 1 A Exportin-1 UNP residues 5-1058 9606
43 3NBZ 1 A, D Exportin-1 10090
44 4FGV 1 A Chromosome region maintenance 1 (CRM1) or Exportin 1 (Xpo1) 209285
45 4HB3 3 C Exportin-1 SEE REMARK 999 4932
46 3GB8 1 A Exportin-1 9606
47 4HZK 1 A, B CRM1 Nuclear transport receptor 209285
48 3NC0 1 A, D Exportin-1 10090
49 3NC1 2 A Exportin-1 10090
50 3NBY 3 A, D Exportin-1 10090
51 4BSM 1 A EXPORTIN-1 RESIDUES 1-1032 9606
52 4BSN 1 A EXPORTIN-1 LACKS THE C-TERMINAL HELICAL EXTENSION, RESIDUE 1-1032 9606