Sequence Similarity Clusters for the Entities in PDB 4HB4

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 57 504
95 % 22 76 339 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 5.0
PDBFlex
90 % 22 80 340
70 % 23 83 370
50 % 23 83 440
40 % 24 84 471
30 % 384 887 11
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 12 6073
95 % 12 32 1897 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 32 1939
70 % 12 32 1954
50 % 12 33 1877
40 % 12 33 1860
30 % 12 33 1806
Entity #3 | Chains: C
Exportin-1 protein, length: 1023 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65630
95 % 13 37 1552 Flexibility: Low
Max RMSD: 6.9, Avg RMSD: 1.0
PDBFlex
90 % 13 37 1577
70 % 13 37 1585
50 % 13 48 1157
40 % 13 48 1144
30 % 13 48 1134

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4HB4 3 C Exportin-1 SEE REMARK 999 4932