Sequence Similarity Clusters for the Entities in PDB 4HB4

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 56 513
95 % 22 75 337 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 5.0
PDBFlex
90 % 22 79 342
70 % 23 82 374
50 % 23 82 440
40 % 24 83 467
30 % 356 845 14
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 12 5946
95 % 12 32 1859 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 32 1899
70 % 12 32 1914
50 % 12 33 1842
40 % 12 33 1821
30 % 12 33 1772
Entity #3 | Chains: C
Exportin-1 protein, length: 1023 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 64649
95 % 13 37 1499 Flexibility: Low
Max RMSD: 6.9, Avg RMSD: 1.0
PDBFlex
90 % 13 37 1519
70 % 13 37 1536
50 % 13 48 1139
40 % 13 48 1129
30 % 13 48 1116

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4HB4 3 C Exportin-1 SEE REMARK 999 4932