Sequence Similarity Clusters for the Entities in PDB 4HB4

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 55 505
95 % 21 74 333 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 4.8
PDBFlex
90 % 21 78 337
70 % 22 81 371
50 % 22 81 436
40 % 23 82 460
30 % 355 834 13
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 12 5815
95 % 11 31 1897 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 11 31 1938
70 % 11 31 1953
50 % 11 32 1856
40 % 11 32 1836
30 % 11 32 1778
Entity #3 | Chains: C
Exportin-1 protein, length: 1023 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63566
95 % 12 36 1502
90 % 12 36 1527
70 % 12 36 1539
50 % 12 47 1138
40 % 12 47 1132
30 % 12 47 1127

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3GJ0 1 A, B GTP-binding nuclear protein Ran 9606
2 4HAT 1 A GTP-binding nuclear protein Ran 9606
3 4WVF 1 A GTP-binding nuclear protein Ran 9606
4 5CIQ 1 A, B GTP-binding nuclear protein Ran 9606
5 4HB2 1 A GTP-binding nuclear protein Ran 9606
6 3GJ3 1 A GTP-binding nuclear protein Ran 9606
7 3GJ8 1 A, C GTP-binding nuclear protein Ran 9606
8 1I2M 1 A, C GTP-BINDING NUCLEAR PROTEIN RAN 9606
9 5CJ2 1 A, B, C, D, E, F, G, H GTP-binding nuclear protein Ran 9606
10 5CIW 1 A, B GTP-binding nuclear protein Ran 9606
11 4HAW 1 A GTP-binding nuclear protein Ran 9606
12 4HAZ 1 A GTP-binding nuclear protein Ran 9606
13 3GJ5 1 A, C GTP-binding nuclear protein Ran 9606
14 5CIT 1 A, B GTP-binding nuclear protein Ran 9606
15 4HAU 1 A GTP-binding nuclear protein Ran 9606
16 3GJ7 1 A, C GTP-binding nuclear protein Ran 9606
17 4HAV 1 A GTP-binding nuclear protein Ran 9606
18 4GMX 1 A GTP-binding nuclear protein Ran 9606
19 5UWP 1 A GTP-binding nuclear protein Ran 9606
20 5DIF 1 A GTP-binding nuclear protein Ran 9606
21 4HB4 1 A GTP-binding nuclear protein Ran 9606
22 3RAN 1 A, B, C, D PROTEIN (GTP-BINDING NUCLEAR PROTEIN RAN) Q69L MUTANT CONSTRUCTED BY PROTEIN ENGINEERING 9612 3.5.1.2 | Details
23 1BYU 1 A, B PROTEIN (GTP-BINDING PROTEIN RAN) ALL 9612 3.5.1.2 | Details
24 4GPT 1 A GTP-binding nuclear protein Ran 9606
25 5UWI 1 A GTP-binding nuclear protein Ran 9606
26 5UWW 1 A GTP-binding nuclear protein Ran 9606
27 3CH5 1 A GTP-binding nuclear protein Ran 9606
28 5UWJ 1 A GTP-binding nuclear protein Ran 9606
29 5DI9 1 A GTP-binding nuclear protein Ran 9606
30 4HB0 1 A GTP-binding nuclear protein Ran 9606
31 1WA5 1 A GTP-BINDING NUCLEAR PROTEIN RAN RESIDUES 1-176 9612 3.5.1.2 | Details
32 4HAX 2 A GTP-binding nuclear protein Ran 9606
33 5UWU 1 A GTP-binding nuclear protein Ran 9606
34 5UWH 1 A GTP-binding nuclear protein Ran 9606
35 5DHF 1 A GTP-binding nuclear protein Ran 9606
36 5UWR 1 A GTP-binding nuclear protein Ran 9606
37 3GJ4 1 A, C GTP-binding nuclear protein Ran 9606
38 5UWQ 1 A GTP-binding nuclear protein Ran 9606
39 4HAY 1 A GTP-binding nuclear protein Ran 9606
40 5UWT 1 A GTP-binding nuclear protein Ran 9606
41 5UWO 1 A GTP-binding nuclear protein Ran 9606
42 5UWS 1 A GTP-binding nuclear protein Ran 9606
43 1QG2 1 A PROTEIN (RAN) ALL 9612 3.5.1.2 | Details
44 1QG4 1 A, B PROTEIN (RAN) ALL 9612 3.5.1.2 | Details
45 5BXQ 2 C, D, E GTP-binding nuclear protein Ran 9612 3.5.1.2 | Details
46 3EA5 1 A, C GTP-binding nuclear protein Ran 9606
47 5DH9 1 A GTP-binding nuclear protein Ran 9606
48 5JLJ 1 A GTP-binding nuclear protein Ran 9606
49 1IBR 1 A, C GTP-binding nuclear protein RAN 9606
50 1A2K 2 C, D, E RAN 9612 3.5.1.2 | Details
51 5CLL 1 A, C GTP-binding nuclear protein Ran 9606
52 3GJ6 1 A GTP-binding nuclear protein Ran 9606
53 5DHA 1 A GTP-binding nuclear protein Ran 9606
54 3GJX 2 C, F GTP-binding nuclear protein Ran 9606
55 2BKU 1 A, C GTP-BINDING NUCLEAR PROTEIN RAN RESIDUES 1-177 9612 3.5.1.2 | Details
56 5DIS 2 B GTP-binding nuclear protein Ran UNP residues 8-179 9606
57 1K5D 1 A, D, G, J GTP-binding nuclear protein RAN 9606
58 3NBZ 3 C, F GTP-binding nuclear protein Ran 9606
59 4OL0 1 A GTP-binding nuclear protein Ran 9606
60 4HB3 1 A GTP-binding nuclear protein Ran 9606
61 3W3Z 2 B GTP-binding nuclear protein Ran UNP residues 1-176 9612 3.5.1.2 | Details
62 3NC0 3 C, F GTP-binding nuclear protein Ran 9606
63 3A6P 3 C, H GTP-binding nuclear protein Ran 9612 3.5.1.2 | Details
64 5DLQ 2 C, D GTP-binding nuclear protein Ran 9606
65 5CLQ 1 A, C GTP-binding nuclear protein Ran 9606
66 1RRP 1 A, C RAN 9606
67 3NC1 1 C GTP-binding nuclear protein Ran 9606
68 1K5G 1 A, D, G, J GTP-binding nuclear protein RAN 9606
69 1QBK 2 C RAN FULL-LENGTH PROTEIN 9606
70 3NBY 2 C, F GTP-binding nuclear protein Ran 9606
71 4C0Q 2 C, D GTP-BINDING NUCLEAR PROTEIN RAN 9606
72 3ZJY 1 A, D, F GTP-BINDING NUCLEAR PROTEIN RAN RESIDUES 1-180 9606
73 2MMG 1 A GTP-binding nuclear protein Ran 9606
74 2MMC 1 A GTP-binding nuclear protein Ran 9606