Sequence Similarity Clusters for the Entities in PDB 4HB4

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 57 537
95 % 22 80 337 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 5.0
PDBFlex
90 % 22 84 331
70 % 23 87 364
50 % 23 87 440
40 % 24 88 465
30 % 406 918 11
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 13 5439
95 % 12 36 1714 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 36 1749
70 % 12 36 1769
50 % 12 37 1672
40 % 12 37 1670
30 % 12 37 1634
Entity #3 | Chains: C
Exportin-1 protein, length: 1023 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 17436
95 % 13 41 1444 Flexibility: Low
Max RMSD: 6.9, Avg RMSD: 1.0
PDBFlex
90 % 13 41 1467
70 % 13 41 1481
50 % 13 52 1099
40 % 13 52 1103
30 % 13 52 1091

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3GJ0 1 A, B GTP-binding nuclear protein Ran 9606
2 4HAT 1 A GTP-binding nuclear protein Ran 9606
3 4WVF 1 A GTP-binding nuclear protein Ran 9606
4 5CIQ 1 A, B GTP-binding nuclear protein Ran 9606
5 4HB2 1 A GTP-binding nuclear protein Ran 9606
6 3GJ3 1 A GTP-binding nuclear protein Ran 9606
7 3GJ8 1 A, C GTP-binding nuclear protein Ran 9606
8 1I2M 1 A, C GTP-BINDING NUCLEAR PROTEIN RAN 9606
9 5CJ2 1 A, B, C, D, E, F, G, H GTP-binding nuclear protein Ran 9606
10 5CIW 1 A, B GTP-binding nuclear protein Ran 9606
11 4HAW 1 A GTP-binding nuclear protein Ran 9606
12 4HAZ 1 A GTP-binding nuclear protein Ran 9606
13 3GJ5 1 A, C GTP-binding nuclear protein Ran 9606
14 5CIT 1 A, B GTP-binding nuclear protein Ran 9606
15 4HAU 1 A GTP-binding nuclear protein Ran 9606
16 3GJ7 1 A, C GTP-binding nuclear protein Ran 9606
17 4HAV 1 A GTP-binding nuclear protein Ran 9606
18 4GMX 1 A GTP-binding nuclear protein Ran 9606
19 5UWP 1 A GTP-binding nuclear protein Ran 9606
20 5DIF 1 A GTP-binding nuclear protein Ran 9606
21 6CIT 1 A GTP-binding nuclear protein Ran 9606
22 4HB4 1 A GTP-binding nuclear protein Ran 9606
23 3RAN 1 A, B, C, D PROTEIN (GTP-BINDING NUCLEAR PROTEIN RAN) Q69L MUTANT CONSTRUCTED BY PROTEIN ENGINEERING 9612
24 1BYU 1 A, B PROTEIN (GTP-BINDING PROTEIN RAN) ALL 9612
25 4GPT 1 A GTP-binding nuclear protein Ran 9606
26 5UWI 1 A GTP-binding nuclear protein Ran 9606
27 5YST 1 A GTP-binding nuclear protein Ran 9606
28 5UWW 1 A GTP-binding nuclear protein Ran 9606
29 3CH5 1 A GTP-binding nuclear protein Ran 9606
30 5UWJ 1 A GTP-binding nuclear protein Ran 9606
31 5DI9 1 A GTP-binding nuclear protein Ran 9606
32 4HB0 1 A GTP-binding nuclear protein Ran 9606
33 1WA5 1 A GTP-BINDING NUCLEAR PROTEIN RAN RESIDUES 1-176 9612
34 4HAX 2 A GTP-binding nuclear protein Ran 9606
35 5UWU 1 A GTP-binding nuclear protein Ran 9606
36 5UWH 1 A GTP-binding nuclear protein Ran 9606
37 5DHF 1 A GTP-binding nuclear protein Ran 9606
38 5UWR 1 A GTP-binding nuclear protein Ran 9606
39 3GJ4 1 A, C GTP-binding nuclear protein Ran 9606
40 5UWQ 1 A GTP-binding nuclear protein Ran 9606
41 4HAY 1 A GTP-binding nuclear protein Ran 9606
42 5YTB 1 A GTP-binding nuclear protein Ran 9606
43 5UWT 1 A GTP-binding nuclear protein Ran 9606
44 5UWO 1 A GTP-binding nuclear protein Ran 9606
45 5UWS 1 A GTP-binding nuclear protein Ran 9606
46 1QG2 1 A PROTEIN (RAN) ALL 9612
47 1QG4 1 A, B PROTEIN (RAN) ALL 9612
48 5YSU 1 A GTP-binding nuclear protein Ran 9606
49 5BXQ 2 C, D, E GTP-binding nuclear protein Ran 9612
50 3EA5 1 A, C GTP-binding nuclear protein Ran 9606
51 5YRO 1 A GTP-binding nuclear protein Ran 9606
52 5DH9 1 A GTP-binding nuclear protein Ran 9606
53 5JLJ 1 A GTP-binding nuclear protein Ran 9606
54 1IBR 1 A, C GTP-binding nuclear protein RAN 9606
55 1A2K 2 C, D, E RAN 9612
56 5CLL 1 A, C GTP-binding nuclear protein Ran 9606
57 3GJ6 1 A GTP-binding nuclear protein Ran 9606
58 5DHA 1 A GTP-binding nuclear protein Ran 9606
59 3GJX 2 C, F GTP-binding nuclear protein Ran 9606
60 2BKU 1 A, C GTP-BINDING NUCLEAR PROTEIN RAN RESIDUES 1-177 9612
61 5DIS 2 B GTP-binding nuclear protein Ran UNP residues 8-179 9606
62 1K5D 1 A, D, G, J GTP-binding nuclear protein RAN 9606
63 3NBZ 3 C, F GTP-binding nuclear protein Ran 9606
64 4OL0 1 A GTP-binding nuclear protein Ran 9606
65 4HB3 1 A GTP-binding nuclear protein Ran 9606
66 5YU6 3 B, D GTP-binding nuclear protein Ran 9612
67 3W3Z 2 B GTP-binding nuclear protein Ran UNP residues 1-176 9612
68 3NC0 3 C, F GTP-binding nuclear protein Ran 9606
69 3A6P 3 C, H GTP-binding nuclear protein Ran 9612
70 5DLQ 2 C, D GTP-binding nuclear protein Ran 9606
71 5CLQ 1 A, C GTP-binding nuclear protein Ran 9606
72 1RRP 1 A, C RAN 9606
73 3NC1 1 C GTP-binding nuclear protein Ran 9606
74 1K5G 1 A, D, G, J GTP-binding nuclear protein RAN 9606
75 1QBK 2 C RAN FULL-LENGTH PROTEIN 9606
76 3NBY 2 C, F GTP-binding nuclear protein Ran 9606
77 4C0Q 2 C, D GTP-BINDING NUCLEAR PROTEIN RAN 9606
78 3ZJY 1 A, D, F GTP-BINDING NUCLEAR PROTEIN RAN RESIDUES 1-180 9606
79 2MMG 1 A GTP-binding nuclear protein Ran 9606
80 2MMC 1 A GTP-binding nuclear protein Ran 9606