Sequence Similarity Clusters for the Entities in PDB 4HB4

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 57 537
95 % 22 80 337 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 5.0
PDBFlex
90 % 22 84 331
70 % 23 87 364
50 % 23 87 440
40 % 24 88 465
30 % 406 918 11
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 13 5439
95 % 12 36 1714 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 36 1749
70 % 12 36 1769
50 % 12 37 1672
40 % 12 37 1670
30 % 12 37 1634
Entity #3 | Chains: C
Exportin-1 protein, length: 1023 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 17436
95 % 13 41 1444 Flexibility: Low
Max RMSD: 6.9, Avg RMSD: 1.0
PDBFlex
90 % 13 41 1467
70 % 13 41 1481
50 % 13 52 1099
40 % 13 52 1103
30 % 13 52 1091

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3GJ0 1 A, B GTP-binding nuclear protein Ran 9606
2 4HAT 1 A GTP-binding nuclear protein Ran 9606
3 4WVF 1 A GTP-binding nuclear protein Ran 9606
4 5CIQ 1 A, B GTP-binding nuclear protein Ran 9606
5 4HB2 1 A GTP-binding nuclear protein Ran 9606
6 3GJ3 1 A GTP-binding nuclear protein Ran 9606
7 3GJ8 1 A, C GTP-binding nuclear protein Ran 9606
8 1I2M 1 A, C GTP-BINDING NUCLEAR PROTEIN RAN 9606
9 5CJ2 1 A, B, C, D, E, F, G, H GTP-binding nuclear protein Ran 9606
10 5CIW 1 A, B GTP-binding nuclear protein Ran 9606
11 4HAW 1 A GTP-binding nuclear protein Ran 9606
12 4HAZ 1 A GTP-binding nuclear protein Ran 9606
13 3GJ5 1 A, C GTP-binding nuclear protein Ran 9606
14 5CIT 1 A, B GTP-binding nuclear protein Ran 9606
15 4HAU 1 A GTP-binding nuclear protein Ran 9606
16 3GJ7 1 A, C GTP-binding nuclear protein Ran 9606
17 4HAV 1 A GTP-binding nuclear protein Ran 9606
18 4GMX 1 A GTP-binding nuclear protein Ran 9606
19 3M1I 1 A GTP-binding nuclear protein GSP1/CNR1 4932
20 5UWP 1 A GTP-binding nuclear protein Ran 9606
21 5DIF 1 A GTP-binding nuclear protein Ran 9606
22 6CIT 1 A GTP-binding nuclear protein Ran 9606
23 4HB4 1 A GTP-binding nuclear protein Ran 9606
24 3RAN 1 A, B, C, D PROTEIN (GTP-BINDING NUCLEAR PROTEIN RAN) Q69L MUTANT CONSTRUCTED BY PROTEIN ENGINEERING 9612
25 1BYU 1 A, B PROTEIN (GTP-BINDING PROTEIN RAN) ALL 9612
26 3WYG 1 A Gsp1p UNP residues 1-182 4932
27 4GPT 1 A GTP-binding nuclear protein Ran 9606
28 5UWI 1 A GTP-binding nuclear protein Ran 9606
29 5YST 1 A GTP-binding nuclear protein Ran 9606
30 5UWW 1 A GTP-binding nuclear protein Ran 9606
31 3CH5 1 A GTP-binding nuclear protein Ran 9606
32 3WYF 1 A, D Gsp1p 4932
33 5UWJ 1 A GTP-binding nuclear protein Ran 9606
34 5DI9 1 A GTP-binding nuclear protein Ran 9606
35 4HB0 1 A GTP-binding nuclear protein Ran 9606
36 1WA5 1 A GTP-BINDING NUCLEAR PROTEIN RAN RESIDUES 1-176 9612
37 4HAX 2 A GTP-binding nuclear protein Ran 9606
38 5UWU 1 A GTP-binding nuclear protein Ran 9606
39 5XOJ 1 A GTP-binding nuclear protein UNP residues 1-182 4932
40 5UWH 1 A GTP-binding nuclear protein Ran 9606
41 5DHF 1 A GTP-binding nuclear protein Ran 9606
42 5UWR 1 A GTP-binding nuclear protein Ran 9606
43 3GJ4 1 A, C GTP-binding nuclear protein Ran 9606
44 5UWQ 1 A GTP-binding nuclear protein Ran 9606
45 4HAY 1 A GTP-binding nuclear protein Ran 9606
46 5YTB 1 A GTP-binding nuclear protein Ran 9606
47 5UWT 1 A GTP-binding nuclear protein Ran 9606
48 5UWO 1 A GTP-binding nuclear protein Ran 9606
49 5UWS 1 A GTP-binding nuclear protein Ran 9606
50 1QG2 1 A PROTEIN (RAN) ALL 9612
51 1QG4 1 A, B PROTEIN (RAN) ALL 9612
52 5YSU 1 A GTP-binding nuclear protein Ran 9606
53 5BXQ 2 C, D, E GTP-binding nuclear protein Ran 9612
54 3EA5 1 A, C GTP-binding nuclear protein Ran 9606
55 5YRO 1 A GTP-binding nuclear protein Ran 9606
56 5DH9 1 A GTP-binding nuclear protein Ran 9606
57 5JLJ 1 A GTP-binding nuclear protein Ran 9606
58 1IBR 1 A, C GTP-binding nuclear protein RAN 9606
59 1A2K 2 C, D, E RAN 9612
60 5CLL 1 A, C GTP-binding nuclear protein Ran 9606
61 3GJ6 1 A GTP-binding nuclear protein Ran 9606
62 5DHA 1 A GTP-binding nuclear protein Ran 9606
63 3GJX 2 C, F GTP-binding nuclear protein Ran 9606
64 2BKU 1 A, C GTP-BINDING NUCLEAR PROTEIN RAN RESIDUES 1-177 9612
65 5DIS 2 B GTP-binding nuclear protein Ran UNP residues 8-179 9606
66 1K5D 1 A, D, G, J GTP-binding nuclear protein RAN 9606
67 3NBZ 3 C, F GTP-binding nuclear protein Ran 9606
68 2X19 1 A GTP-BINDING NUCLEAR PROTEIN GSP1/CNR1 RESIDUES 8-179 4932
69 4OL0 1 A GTP-binding nuclear protein Ran 9606
70 4HB3 1 A GTP-binding nuclear protein Ran 9606
71 5YU6 3 B, D GTP-binding nuclear protein Ran 9612
72 3W3Z 2 B GTP-binding nuclear protein Ran UNP residues 1-176 9612
73 3NC0 3 C, F GTP-binding nuclear protein Ran 9606
74 3A6P 3 C, H GTP-binding nuclear protein Ran 9612
75 5DLQ 2 C, D GTP-binding nuclear protein Ran 9606
76 5CLQ 1 A, C GTP-binding nuclear protein Ran 9606
77 1RRP 1 A, C RAN 9606
78 3NC1 1 C GTP-binding nuclear protein Ran 9606
79 1K5G 1 A, D, G, J GTP-binding nuclear protein RAN 9606
80 3ICQ 2 B, C GTP-binding nuclear protein GSP1/CNR1 Ran, UNP residues 9-179 4932
81 1QBK 2 C RAN FULL-LENGTH PROTEIN 9606
82 3NBY 2 C, F GTP-binding nuclear protein Ran 9606
83 4C0Q 2 C, D GTP-BINDING NUCLEAR PROTEIN RAN 9606
84 3ZJY 1 A, D, F GTP-BINDING NUCLEAR PROTEIN RAN RESIDUES 1-180 9606
85 2N1B 1 A GTP-binding nuclear protein Ran 9606
86 2MMG 1 A GTP-binding nuclear protein Ran 9606
87 2MMC 1 A GTP-binding nuclear protein Ran 9606