Sequence Similarity Clusters for the Entities in PDB 4HB4

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 56 513
95 % 22 75 337 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 5.0
PDBFlex
90 % 22 79 342
70 % 23 82 374
50 % 23 82 440
40 % 24 83 467
30 % 356 845 14
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 12 5946
95 % 12 32 1859 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 12 32 1899
70 % 12 32 1914
50 % 12 33 1842
40 % 12 33 1821
30 % 12 33 1772
Entity #3 | Chains: C
Exportin-1 protein, length: 1023 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 64649
95 % 13 37 1499 Flexibility: Low
Max RMSD: 6.9, Avg RMSD: 1.0
PDBFlex
90 % 13 37 1519
70 % 13 37 1536
50 % 13 48 1139
40 % 13 48 1129
30 % 13 48 1116

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3GJ0 1 A, B GTP-binding nuclear protein Ran 9606
2 4HAT 1 A GTP-binding nuclear protein Ran 9606
3 4WVF 1 A GTP-binding nuclear protein Ran 9606
4 5CIQ 1 A, B GTP-binding nuclear protein Ran 9606
5 4HB2 1 A GTP-binding nuclear protein Ran 9606
6 3GJ3 1 A GTP-binding nuclear protein Ran 9606
7 4DJT 1 A, B GTP-binding nuclear protein GSP1 6035
8 3GJ8 1 A, C GTP-binding nuclear protein Ran 9606
9 1I2M 1 A, C GTP-BINDING NUCLEAR PROTEIN RAN 9606
10 5CJ2 1 A, B, C, D, E, F, G, H GTP-binding nuclear protein Ran 9606
11 5CIW 1 A, B GTP-binding nuclear protein Ran 9606
12 4HAW 1 A GTP-binding nuclear protein Ran 9606
13 4HAZ 1 A GTP-binding nuclear protein Ran 9606
14 3GJ5 1 A, C GTP-binding nuclear protein Ran 9606
15 5CIT 1 A, B GTP-binding nuclear protein Ran 9606
16 4HAU 1 A GTP-binding nuclear protein Ran 9606
17 3GJ7 1 A, C GTP-binding nuclear protein Ran 9606
18 4HAV 1 A GTP-binding nuclear protein Ran 9606
19 4GMX 1 A GTP-binding nuclear protein Ran 9606
20 3M1I 1 A GTP-binding nuclear protein GSP1/CNR1 4932
21 5UWP 1 A GTP-binding nuclear protein Ran 9606
22 5DIF 1 A GTP-binding nuclear protein Ran 9606
23 6CIT 1 A GTP-binding nuclear protein Ran 9606
24 4HB4 1 A GTP-binding nuclear protein Ran 9606
25 3RAN 1 A, B, C, D PROTEIN (GTP-BINDING NUCLEAR PROTEIN RAN) Q69L MUTANT CONSTRUCTED BY PROTEIN ENGINEERING 9612 3.5.1.2 | Details
26 1BYU 1 A, B PROTEIN (GTP-BINDING PROTEIN RAN) ALL 9612 3.5.1.2 | Details
27 3WYG 1 A Gsp1p UNP residues 1-182 4932
28 4GPT 1 A GTP-binding nuclear protein Ran 9606
29 5UWI 1 A GTP-binding nuclear protein Ran 9606
30 5UWW 1 A GTP-binding nuclear protein Ran 9606
31 3CH5 1 A GTP-binding nuclear protein Ran 9606
32 3WYF 1 A, D Gsp1p 4932
33 5UWJ 1 A GTP-binding nuclear protein Ran 9606
34 5DI9 1 A GTP-binding nuclear protein Ran 9606
35 4HB0 1 A GTP-binding nuclear protein Ran 9606
36 1WA5 1 A GTP-BINDING NUCLEAR PROTEIN RAN RESIDUES 1-176 9612 3.5.1.2 | Details
37 4HAX 2 A GTP-binding nuclear protein Ran 9606
38 5UWU 1 A GTP-binding nuclear protein Ran 9606
39 5XOJ 1 A GTP-binding nuclear protein UNP residues 1-182 4932
40 5UWH 1 A GTP-binding nuclear protein Ran 9606
41 5DHF 1 A GTP-binding nuclear protein Ran 9606
42 5UWR 1 A GTP-binding nuclear protein Ran 9606
43 3GJ4 1 A, C GTP-binding nuclear protein Ran 9606
44 5UWQ 1 A GTP-binding nuclear protein Ran 9606
45 4HAY 1 A GTP-binding nuclear protein Ran 9606
46 5UWT 1 A GTP-binding nuclear protein Ran 9606
47 5UWO 1 A GTP-binding nuclear protein Ran 9606
48 5UWS 1 A GTP-binding nuclear protein Ran 9606
49 1QG2 1 A PROTEIN (RAN) ALL 9612 3.5.1.2 | Details
50 1QG4 1 A, B PROTEIN (RAN) ALL 9612 3.5.1.2 | Details
51 5BXQ 2 C, D, E GTP-binding nuclear protein Ran 9612 3.5.1.2 | Details
52 3EA5 1 A, C GTP-binding nuclear protein Ran 9606
53 5DH9 1 A GTP-binding nuclear protein Ran 9606
54 5JLJ 1 A GTP-binding nuclear protein Ran 9606
55 1IBR 1 A, C GTP-binding nuclear protein RAN 9606
56 1A2K 2 C, D, E RAN 9612 3.5.1.2 | Details
57 5CLL 1 A, C GTP-binding nuclear protein Ran 9606
58 3GJ6 1 A GTP-binding nuclear protein Ran 9606
59 5DHA 1 A GTP-binding nuclear protein Ran 9606
60 3GJX 2 C, F GTP-binding nuclear protein Ran 9606
61 2BKU 1 A, C GTP-BINDING NUCLEAR PROTEIN RAN RESIDUES 1-177 9612 3.5.1.2 | Details
62 5DIS 2 B GTP-binding nuclear protein Ran UNP residues 8-179 9606
63 1K5D 1 A, D, G, J GTP-binding nuclear protein RAN 9606
64 3NBZ 3 C, F GTP-binding nuclear protein Ran 9606
65 2X19 1 A GTP-BINDING NUCLEAR PROTEIN GSP1/CNR1 RESIDUES 8-179 4932
66 4OL0 1 A GTP-binding nuclear protein Ran 9606
67 4HB3 1 A GTP-binding nuclear protein Ran 9606
68 3W3Z 2 B GTP-binding nuclear protein Ran UNP residues 1-176 9612 3.5.1.2 | Details
69 3NC0 3 C, F GTP-binding nuclear protein Ran 9606
70 3A6P 3 C, H GTP-binding nuclear protein Ran 9612 3.5.1.2 | Details
71 5DLQ 2 C, D GTP-binding nuclear protein Ran 9606
72 5CLQ 1 A, C GTP-binding nuclear protein Ran 9606
73 1RRP 1 A, C RAN 9606
74 3NC1 1 C GTP-binding nuclear protein Ran 9606
75 1K5G 1 A, D, G, J GTP-binding nuclear protein RAN 9606
76 3ICQ 2 B, C GTP-binding nuclear protein GSP1/CNR1 Ran, UNP residues 9-179 4932
77 1QBK 2 C RAN FULL-LENGTH PROTEIN 9606
78 3NBY 2 C, F GTP-binding nuclear protein Ran 9606
79 4C0Q 2 C, D GTP-BINDING NUCLEAR PROTEIN RAN 9606
80 3ZJY 1 A, D, F GTP-BINDING NUCLEAR PROTEIN RAN RESIDUES 1-180 9606
81 2N1B 1 A GTP-binding nuclear protein Ran 9606
82 2MMG 1 A GTP-binding nuclear protein Ran 9606
83 2MMC 1 A GTP-binding nuclear protein Ran 9606