Sequence Similarity Clusters for the Entities in PDB 4HB4

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 51 516
95 % 21 74 330 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 4.8
PDBFlex
90 % 21 78 335
70 % 22 81 371
50 % 22 81 431
40 % 23 82 450
30 % 348 822 16
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 11 6028
95 % 11 31 1899 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 11 31 1943
70 % 11 31 1961
50 % 11 32 1845
40 % 11 32 1847
30 % 11 32 1789
Entity #3 | Chains: C
Exportin-1 protein, length: 1023 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51405
95 % 11 34 1598
90 % 11 34 1630
70 % 11 34 1637
50 % 11 34 1683
40 % 12 47 1117
30 % 12 47 1099

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures