Sequence Similarity Clusters for the Entities in PDB 4HB3

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 51 491
95 % 60 74 310 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 4.9
PDBFlex
90 % 63 78 311
70 % 65 81 345
50 % 65 81 402
40 % 66 82 420
30 % 646 775 16
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 11 5742
95 % 31 31 1787 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 31 31 1824
70 % 31 31 1852
50 % 31 32 1750
40 % 31 32 1758
30 % 31 32 1709
Entity #3 | Chains: C
Exportin-1 protein, length: 1023 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49434
95 % 34 34 1532 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 0.8
PDBFlex
90 % 34 34 1562
70 % 34 34 1560
50 % 34 34 1600
40 % 40 47 1071
30 % 40 47 1048

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.