Sequence Similarity Clusters for the Entities in PDB 4HB3

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 57 540
95 % 65 80 338 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 5.0
PDBFlex
90 % 68 84 333
70 % 70 87 366
50 % 70 87 444
40 % 71 88 470
30 % 781 928 11
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 13 5463
95 % 36 36 1722 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 36 1758
70 % 36 36 1778
50 % 36 37 1681
40 % 36 37 1678
30 % 36 37 1645
Entity #3 | Chains: C
Exportin-1 protein, length: 1023 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 10 7828
95 % 41 41 1456 Flexibility: Low
Max RMSD: 6.9, Avg RMSD: 1.0
PDBFlex
90 % 41 41 1480
70 % 41 41 1493
50 % 45 52 1111
40 % 45 52 1113
30 % 45 52 1099

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures