Sequence Similarity Clusters for the Entities in PDB 4HB3

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 51 486
95 % 60 74 305 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 4.9
PDBFlex
90 % 63 78 304
70 % 65 81 335
50 % 65 81 396
40 % 66 82 414
30 % 640 768 16
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 11 5663
95 % 31 31 1763 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 31 31 1800
70 % 31 31 1827
50 % 31 32 1724
40 % 31 32 1736
30 % 31 32 1685
Entity #3 | Chains: C
Exportin-1 protein, length: 1023 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48750
95 % 34 34 1501 Flexibility: Low
Max RMSD: 6.9, Avg RMSD: 1.1
PDBFlex
90 % 34 34 1532
70 % 34 34 1533
50 % 34 34 1571
40 % 40 47 1059
30 % 40 47 1037

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.