Sequence Similarity Clusters for the Entities in PDB 4HB3

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 51 505
95 % 60 74 325 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 4.8
PDBFlex
90 % 63 78 324
70 % 65 81 362
50 % 65 81 420
40 % 66 82 440
30 % 679 813 16
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 11 5871
95 % 31 31 1824 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 31 31 1861
70 % 31 31 1891
50 % 31 32 1791
40 % 31 32 1800
30 % 31 32 1743
Entity #3 | Chains: C
Exportin-1 protein, length: 1023 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50363
95 % 34 34 1555 Flexibility: Low
Max RMSD: 6.9, Avg RMSD: 1.2
PDBFlex
90 % 34 34 1591
70 % 34 34 1591
50 % 34 34 1636
40 % 40 47 1096
30 % 40 47 1075

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures