Sequence Similarity Clusters for the Entities in PDB 4HB2

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 51 486
95 % 5 74 303
90 % 5 78 305
70 % 5 81 337
50 % 5 81 397
40 % 5 82 414
30 % 150 771 16
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 11 5677
95 % 3 31 1766 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 3 31 1802
70 % 3 31 1831
50 % 3 32 1728
40 % 3 32 1738
30 % 3 32 1688
Entity #3 | Chains: C
Exportin-1 protein, length: 1023 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48806
95 % 3 34 1505 Flexibility: Low
Max RMSD: 6.9, Avg RMSD: 1.2
PDBFlex
90 % 3 34 1536
70 % 3 34 1537
50 % 3 34 1578
40 % 3 47 1058
30 % 3 47 1038

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.