Sequence Similarity Clusters for the Entities in PDB 4HAZ

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 55 506
95 % 12 74 333
90 % 12 78 337
70 % 12 81 371
50 % 12 81 436
40 % 13 82 460
30 % 241 842 13
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 12 5808
95 % 5 31 1894 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 5 31 1936
70 % 5 31 1950
50 % 5 32 1853
40 % 5 32 1834
30 % 5 32 1777
Entity #3 | Chains: C
Exportin-1 protein, length: 1023 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 10 7258
95 % 5 36 1500 Flexibility: Low
Max RMSD: 6.9, Avg RMSD: 1.2
PDBFlex
90 % 5 36 1527
70 % 5 36 1538
50 % 5 47 1135
40 % 5 47 1129
30 % 5 47 1122

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures