Sequence Similarity Clusters for the Entities in PDB 4HAY

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 51 494
95 % 39 74 316 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 4.8
PDBFlex
90 % 41 78 318
70 % 43 81 351
50 % 43 81 407
40 % 44 82 424
30 % 442 782 16
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 11 5803
95 % 24 31 1800 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 24 31 1838
70 % 24 31 1869
50 % 24 32 1768
40 % 24 32 1775
30 % 24 32 1721
Entity #3 | Chains: C
Exportin-1 protein, length: 1023 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49761
95 % 27 34 1544
90 % 27 34 1576
70 % 27 34 1575
50 % 27 34 1615
40 % 29 47 1078
30 % 29 47 1058

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.