Sequence Similarity Clusters for the Entities in PDB 4HAY

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 51 470
95 % 39 74 304 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 4.9
PDBFlex
90 % 40 77 305
70 % 42 80 333
50 % 42 80 396
40 % 43 81 415
30 % 431 763 16
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 11 5600
95 % 24 31 1747 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 24 31 1784
70 % 24 31 1810
50 % 24 32 1702
40 % 24 32 1719
30 % 24 32 1671
Entity #3 | Chains: C
Exportin-1 protein, length: 1023 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48422
95 % 26 33 1530 Flexibility: Low
Max RMSD: 6.9, Avg RMSD: 1.2
PDBFlex
90 % 26 33 1555
70 % 26 33 1570
50 % 26 33 1601
40 % 28 46 1061
30 % 28 46 1041

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.