Sequence Similarity Clusters for the Entities in PDB 4HAW

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 51 470
95 % 11 74 304
90 % 11 77 305
70 % 11 80 333
50 % 11 80 396
40 % 12 81 415
30 % 213 763 16
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 11 5600
95 % 4 31 1747 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 4 31 1784
70 % 4 31 1810
50 % 4 32 1702
40 % 4 32 1719
30 % 4 32 1671
Entity #3 | Chains: C
Exportin-1 protein, length: 1023 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48420
95 % 4 33 1530 Flexibility: Low
Max RMSD: 6.9, Avg RMSD: 1.2
PDBFlex
90 % 4 33 1555
70 % 4 33 1570
50 % 4 33 1601
40 % 4 46 1061
30 % 4 46 1041

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.