Sequence Similarity Clusters for the Entities in PDB 4HAV

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 51 463
95 % 17 74 298
90 % 17 77 301
70 % 17 80 325
50 % 17 80 386
40 % 18 81 408
30 % 258 750 16
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 11 5546
95 % 7 31 1722 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 7 31 1759
70 % 7 31 1792
50 % 7 32 1697
40 % 7 32 1713
30 % 7 32 1661
Entity #3 | Chains: C
Exportin-1 protein, length: 1023 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 23920
95 % 7 33 1500 Flexibility: Low
Max RMSD: 6.9, Avg RMSD: 1.2
PDBFlex
90 % 7 33 1525
70 % 7 33 1554
50 % 7 33 1598
40 % 7 46 1059
30 % 7 46 1038

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.