Sequence Similarity Clusters for the Entities in PDB 4HAV

Entity #1 | Chains: A
GTP-binding nuclear protein Ran protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 55 505
95 % 17 74 333 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 4.8
PDBFlex
90 % 17 78 337
70 % 17 81 371
50 % 17 81 436
40 % 18 82 460
30 % 294 834 13
Entity #2 | Chains: B
Ran-specific GTPase-activating protein 1 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 5815
95 % 7 31 1897 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 7 31 1938
70 % 7 31 1953
50 % 7 32 1856
40 % 7 32 1836
30 % 7 32 1778
Entity #3 | Chains: C
Exportin-1 protein, length: 1023 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 7264
95 % 7 36 1502 Flexibility: Low
Max RMSD: 6.9, Avg RMSD: 1.2
PDBFlex
90 % 7 36 1527
70 % 7 36 1539
50 % 7 47 1138
40 % 7 47 1132
30 % 7 47 1127

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures