Sequence Similarity Clusters for the Entities in PDB 4H9L

Entity #1 | Chains: L
Reaction center protein L chain protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 68 450
95 % 53 97 366 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 53 97 394
70 % 53 97 434
50 % 71 129 381
40 % 71 129 408
30 % 71 129 409
Entity #2 | Chains: M
Reaction center protein M chain protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56807
95 % 53 97 365 Flexibility: Low
Max RMSD: 6.6, Avg RMSD: 0.9
PDBFlex
90 % 53 97 393
70 % 53 97 432
50 % 71 129 380
40 % 71 129 406
30 % 71 129 407
Entity #3 | Chains: H
Reaction center protein H chain protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 96 270
95 % 53 97 367 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 53 97 395
70 % 53 97 435
50 % 53 97 507
40 % 71 129 409
30 % 71 129 410

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures