Sequence Similarity Clusters for the Entities in PDB 4H6J

Entity #1 | Chains: A
HYPOXIA INDUCIBLE FACTOR 1-ALPHA protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56206
95 % 1 1 46039
90 % 1 1 43793
70 % 6 15 3915
50 % 7 16 3359
40 % 7 16 3228
30 % 15 40 1212
Entity #2 | Chains: B
ARYL HYDROCARBON NUCLEAR TRANSLOCATOR protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49639
95 % 7 19 2487 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 7 19 2559
70 % 7 19 2540
50 % 7 19 2608
40 % 7 20 2416
30 % 16 40 1212

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures