4H4O

Crystal Structure of HIV-1 Reverse Transcriptase (RT) in Complex with (E)-3-(3-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)- 4-fluorophenoxy)-5-fluorophenyl)acrylonitrile (JLJ506), A Non-nucleoside inhibitor


Sequence Similarity Clusters for the Entities in PDB 4H4O

Entity #1 | Chains: A
Reverse transcriptase/ribonuclease H, Exoribonuclease H, p66 RT protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 37 1082
95 % 179 255 91 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 179 255 95
70 % 179 255 112
50 % 180 256 151
40 % 181 257 164
30 % 181 257 176
Entity #2 | Chains: B
Reverse transcriptase/ribonuclease H, Exoribonuclease H, p51 RT protein, length: 428 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 105 207
95 % 174 249 115
90 % 174 249 119
70 % 174 249 134
50 % 176 251 159
40 % 176 251 174
30 % 176 251 186

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures