4H4O

Crystal Structure of HIV-1 Reverse Transcriptase (RT) in Complex with (E)-3-(3-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)- 4-fluorophenoxy)-5-fluorophenyl)acrylonitrile (JLJ506), A Non-nucleoside inhibitor


Sequence Similarity Clusters for the Entities in PDB 4H4O

Entity #1 | Chains: A
Reverse transcriptase/ribonuclease H, Exoribonuclease H, p66 RT protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 37 1053
95 % 172 248 89 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 172 248 94
70 % 172 248 113
50 % 173 249 149
40 % 173 249 164
30 % 173 249 180
Entity #2 | Chains: B
Reverse transcriptase/ribonuclease H, Exoribonuclease H, p51 RT protein, length: 428 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 105 201
95 % 167 242 113
90 % 167 242 117
70 % 167 242 133
50 % 168 243 156
40 % 168 243 175
30 % 168 243 188

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.