4H4M

Crystal Structure of HIV-1 Reverse Transcriptase in Complex with (E)-3-(3-chloro-5-(4-chloro-2-(2-(2,4-dioxo-3,4- dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)phenyl)acrylonitrile (JLJ494), a Non-nucleoside Inhibitor


Sequence Similarity Clusters for the Entities in PDB 4H4M

Entity #1 | Chains: A
Reverse transcriptase/ribonuclease H, Exoribonuclease H, p66 RT protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 37 1102
95 % 169 256 112 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 169 256 117
70 % 169 256 130
50 % 170 257 157
40 % 171 258 168
30 % 171 258 179
Entity #2 | Chains: B
Reverse transcriptase/ribonuclease H, Exoribonuclease H, p51 RT protein, length: 428 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 63 106 209
95 % 164 250 118 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 164 250 122
70 % 164 250 137
50 % 166 252 164
40 % 166 252 175
30 % 166 252 187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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