4H4M

Crystal Structure of HIV-1 Reverse Transcriptase in Complex with (E)-3-(3-chloro-5-(4-chloro-2-(2-(2,4-dioxo-3,4- dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)phenyl)acrylonitrile (JLJ494), a Non-nucleoside Inhibitor


Sequence Similarity Clusters for the Entities in PDB 4H4M

Entity #1 | Chains: A
Reverse transcriptase/ribonuclease H, Exoribonuclease H, p66 RT protein, length: 557 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 33 1145
95 % 152 237 106 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 152 237 110
70 % 152 237 126
50 % 153 238 150
40 % 153 238 168
30 % 153 238 184
Entity #2 | Chains: B
Reverse transcriptase/ribonuclease H, Exoribonuclease H, p51 RT protein, length: 428 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 52 94 216
95 % 147 231 112 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.6
PDBFlex
90 % 147 231 117
70 % 147 231 135
50 % 148 232 164
40 % 148 232 179
30 % 148 232 193

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.