Sequence Similarity Clusters for the Entities in PDB 4H26

Entity #1 | Chains: A,D
HLA class II histocompatibility antigen, DR alpha chain protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 91 226
95 % 62 98 268 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 70 115 233
70 % 70 115 251
50 % 96 171 181
40 % 96 171 194
30 % 198 355 99
Entity #2 | Chains: B,E
MHC class II antigen protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21902
95 % 4 5 8393 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 61 94 300
70 % 97 170 156
50 % 97 172 180
40 % 97 172 193
30 % 199 355 99
Entity #3 | Chains: C,F
peptide protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5NI9 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
2 4X5W 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain extracellular, UNP residues 30-227 9606
3 5NIG 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
4 4MD5 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
5 4MDJ 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
6 6ATF 2 B, E MHC class II antigen UNP residues 30-219 9606
7 3C5J 2 B MHC class II antigen UNP residues 30-219 9606
8 4MD4 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
9 4MDI 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
10 3PDO 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain extracellular domain 9606
11 6ATI 2 B, E MHC class II antigen UNP residues 30-219 9606
12 1KLU 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN residues 30-219 9606
13 6BIY 2 B HLA class II DR-beta (HLA-DR B) 9606
14 5JLZ 2 B, D HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
15 1FV1 2 B, E MAJOR HISTOCOMPATIBILITY COMPLEX BETA CHAIN 9606
16 6BIJ 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
17 6CPN 2 B HLA class II histocompatibility antigen, DRB1-11 beta chain 9606
18 6BIZ 2 B HLA class II DR-beta (HLA-DR B) 9606
19 2G9H 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
20 6BIX 2 B HLA class II DR-beta (HLA-DR B) 9606
21 4MD0 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
22 4I5B 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
23 4AEN 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DRB1-1 BETA CHAIN EXTRACELLULAR DOMAIN, RESIDUES 30-227 9606
24 1D5Z 2 B PROTEIN (HLA CLASS II HISTOCOMPATIBILITY ANTIGEN) DR-4 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
25 3L6F 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-221 9606
26 1PYW 2 B HLA class II histocompatibility antigen, DR-1 beta chain Extracellular domain of HLA-DRB1 9606
27 1D5M 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR-4 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
28 4MCY 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
29 4OV5 2 B, E, H, K, N, Q HLA class II histocompatibility antigen, DRB1-1 beta chain Secreted extracellular domain (UNP residues 30-219) 9606
30 6BIR 2 B MHC class II antigen 9606
31 3QXD 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-219 9606
32 3S5L 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain MHC class II b chain 9606
33 4Y19 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain UNP residues 30-219 9606
34 1JWU 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
35 4H25 2 B, E MHC class II antigen 9606
36 2Q6W 2 B, E HLA class II histocompatibility antigen, DRB3-1 beta chain sequence database residues 30-219 9606 3.1.1 | Details
37 6BIL 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
38 1SJH 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain of HLA-DRB*0101 9606
39 4MCZ 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
40 1SJE 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracelluar domain of HLA-DRB*0101 9606
41 6CPO 2 B, E HLA-DRB1 protein 9606
42 1KLG 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN residues 30-219 9606
43 2XN9 5 E MAJOR HISTOCOMPATIBILITY COMPLEX CLASS II BETA CHAIN CHAIN DRB1 0101 EXTRACELLULAR DOMAIN, RESIDUES 30-219 9606
44 1D6E 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR-4 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
45 2IPK 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain, residues 30-219 9606
46 1J8H 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-4 BETA CHAIN Extracellular Domain 9606
47 6CQN 2 B HLA class II histocompatibility antigen, DRB1-11 beta chain 9606
48 6BIN 3 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
49 6CQL 2 B HLA class II histocompatibility antigen, DRB1-11 beta chain 9606
50 1AQD 2 B, E, H, K HLA-DR1 CLASS II HISTOCOMPATIBILITY PROTEIN SECRETED EXTRACELLULAR DOMAINS 9606
51 1T5X 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain 9606
52 5LAX 2 B, D HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular domain, UNP residues 26-206. ADLVPR ARE A PART OF EXPRESSION TAG 9606
53 1JWS 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
54 4FQX 5 B HLA class II histocompatibility antigen, DRB1-1 beta chain unp residues 30-221 9606
55 1T5W 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain 9606
56 4E41 2 B, G HLA class II histocompatibility antigen, DRB1-1 beta chain unp residues 30-219 9606
57 6CPL 2 B HLA class II histocompatibility antigen, DRB1-11 beta chain 9606
58 1HXY 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN 9606
59 1JWM 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
60 3PGC 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-227 9606
61 4H26 2 B, E MHC class II antigen 9606
62 3QXA 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-219 9606
63 2ICW 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain residues 30-219 9606
64 1D5X 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR-4 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
65 2SEB 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN EXTRACELLULAR DOMAIN 9606
66 3PGD 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-227 9606
67 6ATZ 2 B, D MHC class II antigen UNP residues 32-219 9606
68 3S4S 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-221 9606
69 6CQJ 2 B, E, H HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
70 1FYT 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN EXTRACELLULAR DOMAIN 9606
71 1KG0 2 B MHC class II Receptor HLA-DR1 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
72 1DLH 2 B, E CLASS II HISTOCOMPATIBILITY ANTIGEN (HLA-DR1) (BETA CHAIN) 9606
73 6CQQ 2 B, G HLA-DRB1 protein 9606
74 2IAM 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain residues 1-190 (30-219) 9606
75 1R5I 2 B, F HLA class II histocompatibility antigen, DRB1-1 beta chain beta chain of class II MHC (residues 30-219) 9606
76 1BX2 2 B, E PROTEIN (HLA-DR2) EXTRACELLULAR DOMAINS BETA 1, BETA 2 9606
77 6BIV 2 A HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
78 4IS6 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain UNP residues 30-221 9606
79 4GBX 4 B HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
80 2IAN 2 B, G, L, Q HLA class II histocompatibility antigen, DRB1-1 beta chain residues 1-190 (30-219) 9606
81 2OJE 2 B, F HLA class II histocompatibility antigen, DRB1-1 beta chain precursor extracellular domain, residues 30-219 9606
82 1A6A 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
83 1SEB 2 B, F HLA CLASS II HISTOCOMPATIBILITY ANTIGEN EXTRACELLULAR DOMAIN 9606
84 4C56 5 E, K MHC CLASS II ANTIGEN IMMUNOGLOBULIN DOMAIN 9606
85 6CQR 2 B, G HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
86 2FSE 2 B, D HLA class II histocompatibility antigen, DRB1-1 beta chain chains B and D form a chimera with chains A and C, respectively 10090
87 1HQR 2 B HLA-DR BETA CHAIN 9606
88 2WBJ 2 B, F HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DRB1-15 BETA CHAIN MHC CLASS II, RESIDUES 29-227 9606
89 1ZGL 2 B, E, H, K major histocompatibility complex, class II, DR beta 5 HLA-DR2a 9606
90 1LO5 2 B HLA class II histocompatibility antigen, DR-1 beta chain extracellular domain 9606
91 1H15 2 B, E HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR BETA 1 CHAIN BETA CHAIN, RESIDUES 30-219 9606
92 4H1L 2 B, E MHC class II antigen 9606 3.1.1 | Details
93 4Y1A 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain UNP residues 30-219 9606
94 1YMM 2 B HLA class II histocompatibility antigen, DR beta chain 9606