Sequence Similarity Clusters for the Entities in PDB 4H26

Entity #1 | Chains: A,D
HLA class II histocompatibility antigen, DR alpha chain protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 51 82 230
95 % 56 89 282 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 63 105 237
70 % 63 105 267
50 % 89 161 184
40 % 89 161 195
30 % 183 334 98
Entity #2 | Chains: B,E
MHC class II antigen protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22769
95 % 4 5 8161 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 54 84 328
70 % 87 152 161
50 % 89 161 183
40 % 89 161 194
30 % 184 334 98
Entity #3 | Chains: C,F
peptide protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4X5W 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain extracellular, UNP residues 30-227 9606
2 4MD5 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
3 4MDJ 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
4 4P5M 2 B, D, F, H peptide,HLA class II histocompatibility antigen, DP beta 1 chain 9606
5 6BLQ 2 B H2-Ab1 protein 10090
6 1UVQ 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN 9606
7 6ATF 2 B, E MHC class II antigen UNP residues 30-219 9606
8 3C5J 2 B MHC class II antigen UNP residues 30-219 9606
9 4MD4 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
10 6BLR 2 B H2-Ab1 protein 10090
11 4MDI 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
12 5KSA 2 B HLA class II histocompatibility antigen, DQ beta 1 chain 9606
13 3PDO 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain extracellular domain 9606
14 6ATI 2 B, E MHC class II antigen UNP residues 30-219 9606
15 1IAK 2 B MHC CLASS II I-AK WITH COVALENTLY BOUND HEL PEPTIDE 10090
16 1KLU 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN residues 30-219 9606
17 5UJT 2 B, E, H MHC class II HLA-DQ-beta-1 9606
18 1FNG 2 B, D PROTEIN (MHC CLASS II I-EK, BETA CHAIN) WITH COVALENTLY BOUND HB PEPTIDE SOLUBLE ECTO-DOMAIN PLUS COVALENTLY ATTACHED HB PEPTIDE 10090
19 6BIY 2 B HLA class II DR-beta (HLA-DR B) 9606
20 1FNE 2 B, D PROTEIN (MHC CLASS II I-EK, BETA CHAIN) WITH COVALENTLY BOUND HB(D73) PEPTIDE SOLUBLE ECTO-DOMAIN WITH COVALENTLY ATTACHED HB PEPTIDE 10090
21 5JLZ 2 B, D HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
22 1FV1 2 B, E MAJOR HISTOCOMPATIBILITY COMPLEX BETA CHAIN 9606
23 6BIJ 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
24 6BIZ 2 B HLA class II DR-beta (HLA-DR B) 9606
25 2G9H 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
26 6BIX 2 B HLA class II DR-beta (HLA-DR B) 9606
27 5KSV 2 B MHC class II HLA-DQ-beta-1 UNP residues 1-198 9606
28 4MD0 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
29 4P23 4 D 3K peptide and MHC IAb beta chain,H-2 class II histocompatibility antigen, A beta chain residues 31-219 10090
30 4I5B 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
31 4AEN 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DRB1-1 BETA CHAIN EXTRACELLULAR DOMAIN, RESIDUES 30-227 9606
32 1D5Z 2 B PROTEIN (HLA CLASS II HISTOCOMPATIBILITY ANTIGEN) DR-4 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
33 3L6F 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-221 9606
34 1PYW 2 B HLA class II histocompatibility antigen, DR-1 beta chain Extracellular domain of HLA-DRB1 9606
35 1D5M 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR-4 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
36 4MCY 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
37 6BLX 2 B H2-Ab1 protein 10090
38 2NNA 2 B MHC class II antigen residues in database 33-224 9606
39 5V4M 2 C, F, I, L alpha3(135-145)-HLA-DRB1*15:01 9606
40 4MAY 2 B MHC class II antigen unp residues 31-230 9606
41 4OV5 2 B, E, H, K, N, Q HLA class II histocompatibility antigen, DRB1-1 beta chain Secreted extracellular domain (UNP residues 30-219) 9606
42 6BIR 2 B MHC class II antigen 9606
43 1MUJ 2 B H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A BETA CHAIN EXTRACELLULAR BETA-1 and EXTRACELLULAR BETA-2 domains 10090
44 3QXD 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-219 9606
45 1D9K 4 D, H MHC I-AK B CHAIN (BETA CHAIN) 10090
46 3S5L 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain MHC class II b chain 9606
47 4Y19 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain UNP residues 30-219 9606
48 1JWU 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
49 4H25 2 B, E MHC class II antigen 9606
50 1IEA 2 B, D MHC CLASS II I-EK WITH COVALENTLY BOUND HB PEPTIDE 10090
51 2Q6W 2 B, E HLA class II histocompatibility antigen, DRB3-1 beta chain sequence database residues 30-219 9606
52 2PXY 4 D H-2 class II histocompatibility antigen, A-U beta chain extracellular beta-1, extracellular beta-2 10090
53 4AH2 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN GAMMA CHAIN, HLA CLASS II HISTOCOMPATIBILITY ANTIGEN\,DRB1-1 BETA CHAIN EXTRACELLULAR DOMAIN, RESIDUES 106-120,30-227 9606
54 1S9V 2 B, E HLA class II histocompatibility antigen, DQ(1) beta chain residues 1-198 9606
55 6BIL 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
56 1SJH 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain of HLA-DRB*0101 9606
57 4MCZ 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular Domain, UNP residues 30-219 9606
58 3WEX 2 B, D, F, H MHC class II antigen extracellular domain, UNP residues 1-184 9606
59 1SJE 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracelluar domain of HLA-DRB*0101 9606
60 1KLG 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN residues 30-219 9606
61 2XN9 5 E MAJOR HISTOCOMPATIBILITY COMPLEX CLASS II BETA CHAIN CHAIN DRB1 0101 EXTRACELLULAR DOMAIN, RESIDUES 30-219 9606
62 1D6E 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR-4 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
63 2IPK 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain, residues 30-219 9606
64 1J8H 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-4 BETA CHAIN Extracellular Domain 9606
65 1K2D 2 B H-2 class II histocompatibility antigen, A-U beta chain EXTRACELLULAR BETA-1 AND BETA-2 DOMAINS 10090
66 6BIN 3 B HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
67 1KTD 2 B, D Fusion protein consisting of cytochrome C peptide, glycine rich linker, and MHC E-beta-k Fusion protein consists of pigeon cytochrome C peptide, residues 1-14 (AADLIAYLKQASAK), Glycine rich linker, residues 15-30 (GGGGSLVGGGSGGGGS) and mouse MHC E-beta-k chain 10090
68 5DMK 2 B, D, F, H beta chain of Major Histocompatibility Complex Class II, I-Ag7,H2-Ab1 protein UNP residues 31-215 10090
69 1JK8 2 B MHC class II HLA-DQ8 beta chain (DQB1*0302) 9606
70 4P2O 2 B MHC class II E-beta-k 10090
71 1AQD 2 B, E, H, K HLA-DR1 CLASS II HISTOCOMPATIBILITY PROTEIN SECRETED EXTRACELLULAR DOMAINS 9606
72 5KS9 2 B, D HLA class II histocompatibility antigen, DQ beta 1 chain 9606
73 1T5X 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain 9606
74 4Z7U 2 B, D MHC class II HLA-DQ-beta-1 UNP residues 1-192 9606
75 5LAX 2 B, D HLA class II histocompatibility antigen, DRB1-4 beta chain Extracellular domain, UNP residues 26-206. ADLVPR ARE A PART OF EXPRESSION TAG 9606
76 1JWS 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
77 1LNU 2 B, D, F, H H-2 class II histocompatibility antigen, A beta chain 10090
78 4FQX 5 B HLA class II histocompatibility antigen, DRB1-1 beta chain unp residues 30-221 9606
79 4Z7V 2 B, D MHC class II HLA-DQ-beta-1 UNP residues 1-192 9606
80 1I3R 2 B, D, F, H FUSION PROTEIN CONSISTING OF MHC E-BETA-K PRECURSOR, GLYCINE RICH LINKER, AND HEMOGLOBIN BETA-2 CHAIN 10090
81 1T5W 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain 9606
82 1R5V 3 B, D MHC H2-IE-beta 10090
83 4OZF 2 B HLA class II histocompatibility antigen, DQ beta 1 chain 9606
84 4E41 2 B, G HLA class II histocompatibility antigen, DRB1-1 beta chain unp residues 30-219 9606
85 1HXY 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN 9606
86 1U3H 4 D, H H-2 class II histocompatibility antigen, A-U beta chain extracellular beta-1, extracellular beta-2 10090
87 1JWM 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
88 3PGC 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-227 9606
89 4H26 2 B, E MHC class II antigen 9606
90 4P57 2 B, D mim2 peptide,HLA class II histocompatibility antigen, DP beta 1 chain UNP residues 32-218 9606
91 1ES0 2 B 65 KD GLUTAMIC ACID DECARBOXYLASE+H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN PEPTIDE (RESIDUES 222-235) + BETA CHAIN 9606 4.1.1.15 | Details
92 3QXA 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-219 9606
93 5KSU 2 B, E MHC class II HLA-DQ-beta-1 UNP residues 1-198 9606
94 2ICW 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain residues 30-219 9606
95 1D5X 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR-4 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
96 2SEB 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN EXTRACELLULAR DOMAIN 9606
97 3PGD 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-227 9606
98 6ATZ 2 B, D MHC class II antigen UNP residues 32-219 9606
99 4P46 2 D 3K Peptide,H-2 class II histocompatibility antigen, A beta chain Residues 30-218 32630
100 3S4S 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-221 9606
101 2IAD 2 B MHC CLASS II I-AD RESIDUES 126P - 138P OF CHAIN B ARE COVALENTLY LINKED INFLUENZA HEMAGGLUTININ PEPTIDE 10090
102 1FYT 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN EXTRACELLULAR DOMAIN 9606
103 3RDT 2 D 3K peptide, linker and MHC H-2 class II I-Ab beta chain 32630
104 4P5K 2 B, E RAS peptide,HLA class II histocompatibility antigen, DP beta 1 chain UNP residues 32-218 9606
105 3PL6 2 B MHC class II HLA-DQ-beta chain UNP residues 31-232 9606
106 1KG0 2 B MHC class II Receptor HLA-DR1 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
107 3QIU 2 B MHC CLASS II H2-IA-BETA CHAIN 10090
108 1DLH 2 B, E CLASS II HISTOCOMPATIBILITY ANTIGEN (HLA-DR1) (BETA CHAIN) 9606
109 4P4K 2 B, F mim2 peptide,HLA class II histocompatibility antigen, DP beta 1 chain UNP residues 32-218 9606
110 3QIB 2 B MHC class II E-beta-k unp residues 29-224 10090
111 1IEB 2 B, D MHC CLASS II I-EK WITH COVALENTLY BOUND HSP70 PEPTIDE 10090
112 2IAM 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain residues 1-190 (30-219) 9606
113 1R5I 2 B, F HLA class II histocompatibility antigen, DRB1-1 beta chain beta chain of class II MHC (residues 30-219) 9606
114 1BX2 2 B, E PROTEIN (HLA-DR2) EXTRACELLULAR DOMAINS BETA 1, BETA 2 9606
115 3C5Z 4 D, H 3K peptide, Linker, and H-2 class II histocompatibility antigen (A beta chain) Fusion protein of ealpha 3K peptide residues 1-13, linker 14-28 and MHC class II Ab UNP residues 30-218 10090
116 4GRL 2 B MHC class II antigen 9606
117 6BIV 2 A HLA class II histocompatibility antigen, DRB1-4 beta chain 9606
118 1KT2 2 B, D Fusion protein consisting of cytochrome C peptide, glycine rich linker, and MHC E-beta-k Fusion protein consists of moth cytochrome C peptide, residues 1-14 (ADLIAYLKQATK), Glycine rich linker, residues 15-30 (GGGGSLVPRGSGGGGS) and mouse MHC E-beta-k chain 304329
119 2Z31 4 D H-2 class II histocompatibility antigen, A-U beta chain precursor extracellular beta-1 and extracellular beta-2 10090
120 4IS6 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain UNP residues 30-221 9606
121 4P4R 2 B, D mim2 peptide,HLA class II histocompatibility antigen, DP beta 1 chain UNP residues 32-218 9606
122 4GBX 4 B HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
123 2IAN 2 B, G, L, Q HLA class II histocompatibility antigen, DRB1-1 beta chain residues 1-190 (30-219) 9606
124 4OZH 2 B, D HLA class II histocompatibility antigen, DQ beta 1 chain 9606
125 1IAO 2 B MHC CLASS II I-AD BOTH THE A AND B CHAINS HAVE AN 8-RESIDUE (SSADLVPR) PEPTIDE BOUND TO THE C-TERMINUS. THE B CHAIN ALSO HAS A 24-RESIDUE PEPTIDE CONSISTING OF A 2-RESIDUE (RG) SIGNAL SEQUENCE, RESIDUES 323 - 339 OF HEN EGG OVALBUMIN AND A 6-RESIDUE (GSGSGS) LINKER, COVALENTLY BONDED TO THE N-TERMINUS. 10090
126 4OZG 2 B, D HLA class II histocompatibility antigen, DQ beta 1 chain 9606
127 5KSB 2 B, D HLA class II histocompatibility antigen, DQ beta 1 chain 9606
128 2OJE 2 B, F HLA class II histocompatibility antigen, DRB1-1 beta chain precursor extracellular domain, residues 30-219 9606
129 4I0P 4 D, H HLA class II histocompatibility antigen, DO beta chain 9606
130 3O6F 2 B, F HLA class II histocompatibility antigen, DRB1-4 beta chain unp residues 30-220 9606
131 4P5T 4 D, H protein of 3K peptide (FEAQKAKANKAVD),Linker region - GGGGSLVPRGSGGGG,H-2 class II histocompatibility antigen, A beta chain,H-2 class II histocompatibility antigen, A beta chain Residues 30-218 10090
132 1A6A 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
133 4Z7W 2 B, D MHC class II HLA-DQ-beta-1 UNP residues 1-192 9606
134 4D8P 2 B, D Peptide from Gamma-gliadin,HLA class II histocompatibility antigen, DQ beta 1 chain Chimera protein of peptide from Gamma-gliadin (residues 68-81 in Uniprot Q94G94), linker, MHC class II antigen (residues 33-230 in uniprot Q5Y7D3) 9606
135 1SEB 2 B, F HLA CLASS II HISTOCOMPATIBILITY ANTIGEN EXTRACELLULAR DOMAIN 9606
136 4P2Q 2 B, G, L, Q MHC class II E-beta-k 10090
137 4C56 5 E, K MHC CLASS II ANTIGEN IMMUNOGLOBULIN DOMAIN 9606
138 1F3J 2 B, E MHC CLASS II NOD BETA CHAIN 10090
139 2FSE 2 B, D HLA class II histocompatibility antigen, DRB1-1 beta chain chains B and D form a chimera with chains A and C, respectively 10090
140 4OZI 2 B, D HLA class II histocompatibility antigen, DQ beta 1 chain 9606
141 3MBE 2 B, F MHC CLASS II H2-IAg7 BETA CHAIN 10090
142 4X5X 2 B, D HLA class II histocompatibility antigen, DRB1-1 beta chain extracellular, UNP residues 30-227 9606
143 4P2R 2 B, G, L, Q MHC class II E-beta-k 10090
144 3LQZ 2 B HLA-DP2 beta chain linked with DRa peptide 9606
145 3CUP 2 B MHC class II H2-IA-beta chain linked to GAD221-235 peptide 10090
146 1HQR 2 B HLA-DR BETA CHAIN 9606
147 3QIW 2 B MHC CLASS II H2-IA-BETA CHAIN unp residues 29-224 10090
148 2WBJ 2 B, F HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DRB1-15 BETA CHAIN MHC CLASS II, RESIDUES 29-227 9606
149 5V4N 2 C, F alpha3(135-145)-HLA-DRB1*01:01 9606
150 1ZGL 2 B, E, H, K major histocompatibility complex, class II, DR beta 5 HLA-DR2a 9606
151 1LO5 2 B HLA class II histocompatibility antigen, DR-1 beta chain extracellular domain 9606
152 1H15 2 B, E HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR BETA 1 CHAIN BETA CHAIN, RESIDUES 30-219 9606
153 4GG6 2 B, D HLA class II histocompatibility antigen, DQ beta 1 chain EXTRACELLULAR DOMAINS, UNP RESIDUES 33-224 9606
154 3C60 4 D, H 3K peptide, Linker, and H-2 class II histocompatibility antigen (A beta chain) Fusion protein of ealpha3K peptide residues 1-13, linker 14-28 and MHC class II Ab UNP residues 30-218 10090
155 1R5W 2 B, D MHC H2-IE-beta 10090
156 4H1L 2 B, E MHC class II antigen 9606
157 3C6L 4 D, H 3K peptide, Linker,and H-2 class II histocompatibility antigen (A beta chain) Fusion protein of Ealpha3K peptide residues 1-13, linker 14-28 and MHC class II Ab UNP residues 30-218 10090
158 4Y1A 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain UNP residues 30-219 9606
159 1YMM 2 B HLA class II histocompatibility antigen, DR beta chain 9606
160 3T0E 2 B HLA class II histocompatibility antigen, DRB1-4 beta chain unp residues 30-221 9606
161 1JL4 2 B H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-K BETA CHAIN 10090