Sequence Similarity Clusters for the Entities in PDB 4H26

Entity #1 | Chains: A,D
HLA class II histocompatibility antigen, DR alpha chain protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 91 226
95 % 62 98 268 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 70 115 233
70 % 70 115 251
50 % 96 171 181
40 % 96 171 194
30 % 198 355 99
Entity #2 | Chains: B,E
MHC class II antigen protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21902
95 % 4 5 8393 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 61 94 300
70 % 97 170 156
50 % 97 172 180
40 % 97 172 193
30 % 199 355 99
Entity #3 | Chains: C,F
peptide protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4H25 2 B, E MHC class II antigen 9606
2 4H26 2 B, E MHC class II antigen 9606