Sequence Similarity Clusters for the Entities in PDB 4H26

Entity #1 | Chains: A,D
HLA class II histocompatibility antigen, DR alpha chain protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 91 220
95 % 62 98 259 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 70 115 221
70 % 70 115 240
50 % 96 171 177
40 % 96 171 189
30 % 198 355 94
Entity #2 | Chains: B,E
MHC class II antigen protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21338
95 % 4 5 8205 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 61 94 288
70 % 97 170 150
50 % 97 172 176
40 % 97 172 188
30 % 199 355 94
Entity #3 | Chains: C,F
peptide protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5NI9 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
2 4X5W 1 A HLA class II histocompatibility antigen, DR alpha chain extracellular, UNP residues 26-217 9606
3 5NIG 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
4 4MD5 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
5 4MDJ 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
6 6ATF 1 A, D HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-206 9606
7 3C5J 1 A HLA class II histocompatibility antigen, DR alpha chain UNP residues 25-206 9606
8 4MD4 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
9 4MDI 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
10 3PDO 1 A HLA class II histocompatibility antigen, DR alpha chain extracellular domain 9606
11 6ATI 1 A, D HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-206 9606
12 1KLU 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN residues 29-207 9606
13 6BIY 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
14 5JLZ 1 A, C HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
15 1FV1 1 A, D MAJOR HISTOCOMPATIBILITY COMPLEX ALPHA CHAIN 9606
16 6BIJ 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
17 6CPN 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
18 6BIZ 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
19 2G9H 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
20 6BIX 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
21 4MD0 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
22 4I5B 1 A, D HLA class II histocompatibility antigen, DR alpha chain 9606
23 4AEN 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN EXTRACELLULAR DOMAIN, RESIDUES 26-217 9606
24 1D5Z 1 A PROTEIN (HLA CLASS II HISTOCOMPATIBILITY ANTIGEN) DR ALPHA CHAIN, EXTRACELLULAR DOMAIN 9606
25 3L6F 1 A HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-207 9606
26 1PYW 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular domain of HLA-DRA 9606
27 1D5M 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR ALPHA CHAIN, EXTRACELLULAR DOMAIN 9606
28 4MCY 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
29 5V4M 1 A, D, G, J HLA-DRA1 9606
30 4OV5 1 A, D, G, J, M, P HLA class II histocompatibility antigen, DR alpha chain Secreted extracellular domain (UNP residues 26-207) 9606
31 6BIR 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
32 3QXD 1 A, D HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-207 9606
33 3S5L 1 A, D HLA class II histocompatibility antigen, DR alpha chain MHC class II a chain 9606
34 4Y19 1 A HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-206 9606
35 1JWU 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
36 4H25 1 A, D HLA class II histocompatibility antigen, DR alpha chain 9606
37 2Q6W 1 A, D HLA class II histocompatibility antigen, DR alpha chain sequence database residues 26-207 9606
38 4AH2 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN EXTRACELLULAR DOMAIN, RESIDUES 26-217 9606
39 6BIL 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
40 1SJH 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular domain of HLA-DRA*0101 9606
41 4MCZ 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
42 1SJE 1 A HLA class II histocompatibility antigen, DR alpha chain Extracelluar domain of HLA-DRA*0101 9606
43 6CPO 1 A, D HLA class II histocompatibility antigen, DR alpha chain 9606
44 1KLG 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN residues 29-205 9606
45 2XN9 4 D HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN, CHAIN DR 0101 EXTRACELLULAR DOMAIN, RESIDUES 26-207 9606
46 1D6E 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR ALPHA CHAIN, EXTRACELLULAR DOMAIN 9606
47 2IPK 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular domain, residues 26-207 9606
48 1J8H 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN Extracellular Domain 9606
49 6CQN 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
50 6BIN 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
51 6CQL 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
52 1AQD 1 A, D, G, J HLA-DR1 CLASS II HISTOCOMPATIBILITY PROTEIN SECRETED EXTRACELLULAR DOMAINS 9606
53 1T5X 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular domain 9606
54 5LAX 1 A, C HLA class II histocompatibility antigen, DR alpha chain Extracellular domain, UNP residues 26-206. ADLVPR ARE A PART OF EXPRESSION TAG 9606
55 1JWS 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
56 4FQX 4 A HLA class II histocompatibility antigen, DR alpha chain unp residues 26-216 9606
57 1T5W 1 A, D HLA class II histocompatibility antigen, DR alpha chain Extracellular domain 9606
58 4E41 1 A, F HLA class II histocompatibility antigen, DR alpha chain unp residues 26-207 9606
59 1HXY 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN 9606
60 1JWM 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
61 3PGC 1 A, D HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-217 9606
62 4H26 1 A, D HLA class II histocompatibility antigen, DR alpha chain 9606
63 3QXA 1 A, D HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-207 9606
64 2ICW 1 A, D HLA class II histocompatibility antigen, DR alpha chain residues 28-206 9606
65 1D5X 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR ALPHA CHAIN, EXTRACELLULAR DOMAIN 9606
66 2SEB 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN EXTRACELLULAR DOMAIN 9606
67 3PGD 1 A, D HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-217 9606
68 6ATZ 1 A, C HLA class II histocompatibility antigen, DR alpha chain UNP residues 29-205 9606
69 3S4S 1 A, D HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-207 9606
70 6CQJ 1 A, D, G HLA class II histocompatibility antigen, DR alpha chain 9606
71 1FYT 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN EXTRACELLULAR DOMAIN 9606
72 1KG0 1 A MHC class II Receptor HLA-DR1 ALPHA CHAIN, EXTRACELLULAR DOMAIN 9606
73 1DLH 1 A, D CLASS II HISTOCOMPATIBILITY ANTIGEN (HLA-DR1) (ALPHA CHAIN) 9606
74 6CQQ 1 A, F HLA class II histocompatibility antigen, DR alpha chain 9606
75 2IAM 1 A HLA class II histocompatibility antigen, DR alpha chain residues 1-182 (26-207) 9606
76 1R5I 1 A, E HLA class II histocompatibility antigen, DR alpha chain alpha chain of class II MHC (residues 26-206) 9606
77 1BX2 1 A, D PROTEIN (HLA-DR2) EXTRACELLULAR DOMAINS ALPHA 1, ALPHA 2 9606
78 6BIV 1 B HLA class II histocompatibility antigen, DR alpha chain 9606
79 4IS6 1 A HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-207 9606
80 4GBX 3 A HLA class II histocompatibility antigen, DR alpha chain 9606
81 2IAN 1 A, F, K, P HLA class II histocompatibility antigen, DR alpha chain residues 1-182 (26-207) 9606
82 2OJE 1 A, E HLA class II histocompatibility antigen, DR alpha chain precursor extracellular domain, residues 27-206 9606
83 3O6F 1 A, E HLA class II histocompatibility antigen, DR alpha chain unp residues 26-207 9606
84 1A6A 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
85 1SEB 1 A, E HLA CLASS II HISTOCOMPATIBILITY ANTIGEN EXTRACELLULAR DOMAIN 9606
86 4C56 4 D, J HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN IMMUNOGLOBULIN DOMAIN 9606
87 6CQR 1 A, F HLA class II histocompatibility antigen, DR alpha chain 9606
88 4X5X 1 A, C HLA class II histocompatibility antigen, DR alpha chain extracellular, UNP residues 26-217 9606
89 1HQR 1 A HLA-DR ALPHA CHAIN 9606
90 2WBJ 1 A, E HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN MHC CLASS II, RESIDUES 26-218 9606
91 5V4N 1 A, D HLA-DRA1 9606
92 1ZGL 1 A, D, G, J HLA class II histocompatibility antigen, DR alpha chain 3A6 9606
93 1LO5 1 A HLA class II histocompatibility antigen, DR alpha chain extracellular domain 9606
94 1H15 1 A, D HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN ALPHA CHAIN, RESIDUES 26-207 9606
95 4H1L 1 A, D HLA class II histocompatibility antigen, DR alpha chain 9606
96 4Y1A 1 A HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-206 9606
97 1YMM 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
98 3T0E 1 A HLA class II histocompatibility antigen, DR alpha chain unp residues 26-207 9606