Sequence Similarity Clusters for the Entities in PDB 4H26

Entity #1 | Chains: A,D
HLA class II histocompatibility antigen, DR alpha chain protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 91 226
95 % 62 98 269 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 70 115 233
70 % 70 115 252
50 % 96 171 181
40 % 96 171 194
30 % 198 355 99
Entity #2 | Chains: B,E
MHC class II antigen protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21937
95 % 4 5 8421 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 61 94 300
70 % 97 170 156
50 % 97 172 180
40 % 97 172 193
30 % 199 355 99
Entity #3 | Chains: C,F
peptide protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5NI9 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
2 4X5W 1 A HLA class II histocompatibility antigen, DR alpha chain extracellular, UNP residues 26-217 9606
3 5NIG 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
4 4MD5 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
5 4MDJ 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
6 6ATF 1 A, D HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-206 9606
7 3C5J 1 A HLA class II histocompatibility antigen, DR alpha chain UNP residues 25-206 9606
8 4MD4 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
9 4MDI 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
10 3PDO 1 A HLA class II histocompatibility antigen, DR alpha chain extracellular domain 9606
11 6ATI 1 A, D HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-206 9606
12 1KLU 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN residues 29-207 9606
13 1FNG 1 A, C PROTEIN (MHC CLASS II I-EK, ALPHA CHAIN) SOLUBLE ECTO-DOMAIN 10090
14 6BIY 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
15 1FNE 1 A, C PROTEIN (MHC CLASS II I-EK, ALPHA CHAIN) SOLUBLE ECTO-DOMAIN 10090
16 5JLZ 1 A, C HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
17 1FV1 1 A, D MAJOR HISTOCOMPATIBILITY COMPLEX ALPHA CHAIN 9606
18 6BIJ 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
19 6CPN 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
20 6BIZ 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
21 2G9H 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
22 6BIX 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
23 4MD0 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
24 4I5B 1 A, D HLA class II histocompatibility antigen, DR alpha chain 9606
25 4AEN 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN EXTRACELLULAR DOMAIN, RESIDUES 26-217 9606
26 1D5Z 1 A PROTEIN (HLA CLASS II HISTOCOMPATIBILITY ANTIGEN) DR ALPHA CHAIN, EXTRACELLULAR DOMAIN 9606
27 3L6F 1 A HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-207 9606
28 1PYW 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular domain of HLA-DRA 9606
29 1D5M 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR ALPHA CHAIN, EXTRACELLULAR DOMAIN 9606
30 4MCY 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
31 5V4M 1 A, D, G, J HLA-DRA1 9606
32 4OV5 1 A, D, G, J, M, P HLA class II histocompatibility antigen, DR alpha chain Secreted extracellular domain (UNP residues 26-207) 9606
33 6BIR 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
34 3QXD 1 A, D HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-207 9606
35 3S5L 1 A, D HLA class II histocompatibility antigen, DR alpha chain MHC class II a chain 9606
36 6BGA 1 A H-2 class II histocompatibility antigen, E-K alpha chain 10090
37 4Y19 1 A HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-206 9606
38 1JWU 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
39 4H25 1 A, D HLA class II histocompatibility antigen, DR alpha chain 9606
40 1IEA 1 A, C MHC CLASS II I-EK WITH COVALENTLY BOUND HB PEPTIDE 10090
41 2Q6W 1 A, D HLA class II histocompatibility antigen, DR alpha chain sequence database residues 26-207 9606
42 4AH2 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN EXTRACELLULAR DOMAIN, RESIDUES 26-217 9606
43 6BIL 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
44 1SJH 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular domain of HLA-DRA*0101 9606
45 4MCZ 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular Domain, UNP residues 26-206 9606
46 1SJE 1 A HLA class II histocompatibility antigen, DR alpha chain Extracelluar domain of HLA-DRA*0101 9606
47 6CPO 1 A, D HLA class II histocompatibility antigen, DR alpha chain 9606
48 1KLG 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN residues 29-205 9606
49 2XN9 4 D HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN, CHAIN DR 0101 EXTRACELLULAR DOMAIN, RESIDUES 26-207 9606
50 1D6E 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR ALPHA CHAIN, EXTRACELLULAR DOMAIN 9606
51 2IPK 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular domain, residues 26-207 9606
52 1J8H 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN Extracellular Domain 9606
53 6CQN 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
54 6BIN 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
55 1KTD 1 A, C H-2 class II histocompatibility antigen, E-D alpha chain 10090
56 6CQL 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
57 4P2O 1 A H-2 class II histocompatibility antigen, E-K alpha chain 10090
58 1AQD 1 A, D, G, J HLA-DR1 CLASS II HISTOCOMPATIBILITY PROTEIN SECRETED EXTRACELLULAR DOMAINS 9606
59 1T5X 1 A HLA class II histocompatibility antigen, DR alpha chain Extracellular domain 9606
60 5LAX 1 A, C HLA class II histocompatibility antigen, DR alpha chain Extracellular domain, UNP residues 26-206. ADLVPR ARE A PART OF EXPRESSION TAG 9606
61 1JWS 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
62 4FQX 4 A HLA class II histocompatibility antigen, DR alpha chain unp residues 26-216 9606
63 1I3R 1 A, C, E, G H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, E-K ALPHA CHAIN 10090
64 1T5W 1 A, D HLA class II histocompatibility antigen, DR alpha chain Extracellular domain 9606
65 1R5V 1 A, C H-2 class II histocompatibility antigen, E-K alpha chain 10090
66 4E41 1 A, F HLA class II histocompatibility antigen, DR alpha chain unp residues 26-207 9606
67 1HXY 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN 9606
68 1JWM 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
69 3PGC 1 A, D HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-217 9606
70 4H26 1 A, D HLA class II histocompatibility antigen, DR alpha chain 9606
71 3QXA 1 A, D HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-207 9606
72 2ICW 1 A, D HLA class II histocompatibility antigen, DR alpha chain residues 28-206 9606
73 1D5X 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR ALPHA CHAIN, EXTRACELLULAR DOMAIN 9606
74 2SEB 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN EXTRACELLULAR DOMAIN 9606
75 3PGD 1 A, D HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-217 9606
76 6ATZ 1 A, C HLA class II histocompatibility antigen, DR alpha chain UNP residues 29-205 9606
77 3S4S 1 A, D HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-207 9606
78 6CQJ 1 A, D, G HLA class II histocompatibility antigen, DR alpha chain 9606
79 1FYT 1 A HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN EXTRACELLULAR DOMAIN 9606
80 1KG0 1 A MHC class II Receptor HLA-DR1 ALPHA CHAIN, EXTRACELLULAR DOMAIN 9606
81 3QIU 1 A H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, E-K alpha chain 10090
82 1DLH 1 A, D CLASS II HISTOCOMPATIBILITY ANTIGEN (HLA-DR1) (ALPHA CHAIN) 9606
83 3QIB 1 A H-2 class II histocompatibility antigen, E-K alpha chain unp residues 26-216 10090
84 1IEB 1 A, C MHC CLASS II I-EK WITH COVALENTLY BOUND HSP70 PEPTIDE 10090
85 6CQQ 1 A, F HLA class II histocompatibility antigen, DR alpha chain 9606
86 2IAM 1 A HLA class II histocompatibility antigen, DR alpha chain residues 1-182 (26-207) 9606
87 1R5I 1 A, E HLA class II histocompatibility antigen, DR alpha chain alpha chain of class II MHC (residues 26-206) 9606
88 1BX2 1 A, D PROTEIN (HLA-DR2) EXTRACELLULAR DOMAINS ALPHA 1, ALPHA 2 9606
89 6BIV 1 B HLA class II histocompatibility antigen, DR alpha chain 9606
90 1KT2 1 A, C H-2 class II histocompatibility antigen, E-D alpha chain 10090
91 4IS6 1 A HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-207 9606
92 4GBX 3 A HLA class II histocompatibility antigen, DR alpha chain 9606
93 2IAN 1 A, F, K, P HLA class II histocompatibility antigen, DR alpha chain residues 1-182 (26-207) 9606
94 2OJE 1 A, E HLA class II histocompatibility antigen, DR alpha chain precursor extracellular domain, residues 27-206 9606
95 3O6F 1 A, E HLA class II histocompatibility antigen, DR alpha chain unp residues 26-207 9606
96 1A6A 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
97 1SEB 1 A, E HLA CLASS II HISTOCOMPATIBILITY ANTIGEN EXTRACELLULAR DOMAIN 9606
98 4P2Q 1 A, F, K, P H-2 class II histocompatibility antigen, E-K alpha chain 10090
99 4C56 4 D, J HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN IMMUNOGLOBULIN DOMAIN 9606
100 6CQR 1 A, F HLA class II histocompatibility antigen, DR alpha chain 9606
101 2FSE 1 A, C H-2 class II histocompatibility antigen, E-K alpha chain chains A and C form a chimera with chains B and D, respectively 9606
102 4X5X 1 A, C HLA class II histocompatibility antigen, DR alpha chain extracellular, UNP residues 26-217 9606
103 4P2R 1 A, F, K, P H-2 class II histocompatibility antigen, E-K alpha chain 10090
104 1HQR 1 A HLA-DR ALPHA CHAIN 9606
105 3QIW 1 A H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, E-K alpha chain unp residues 26-217 10090
106 2WBJ 1 A, E HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN MHC CLASS II, RESIDUES 26-218 9606
107 5V4N 1 A, D HLA-DRA1 9606
108 1ZGL 1 A, D, G, J HLA class II histocompatibility antigen, DR alpha chain 3A6 9606
109 1LO5 1 A HLA class II histocompatibility antigen, DR alpha chain extracellular domain 9606
110 1H15 1 A, D HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN ALPHA CHAIN, RESIDUES 26-207 9606
111 1R5W 1 A, C H-2 class II histocompatibility antigen, E-K alpha chain 10090
112 4H1L 1 A, D HLA class II histocompatibility antigen, DR alpha chain 9606
113 4Y1A 1 A HLA class II histocompatibility antigen, DR alpha chain UNP residues 26-206 9606
114 1YMM 1 A HLA class II histocompatibility antigen, DR alpha chain 9606
115 3T0E 1 A HLA class II histocompatibility antigen, DR alpha chain unp residues 26-207 9606