Sequence Similarity Clusters for the Entities in PDB 4H26

Entity #1 | Chains: A,D
HLA class II histocompatibility antigen, DR alpha chain protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 51 82 219
95 % 56 89 277 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 63 105 228
70 % 63 105 261
50 % 89 161 177
40 % 89 161 192
30 % 183 334 81
Entity #2 | Chains: B,E
MHC class II antigen protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22212
95 % 4 5 7975 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 54 84 316
70 % 87 152 156
50 % 89 161 176
40 % 89 161 191
30 % 184 334 81
Entity #3 | Chains: C,F
peptide protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures