Sequence Similarity Clusters for the Entities in PDB 4H26

Entity #1 | Chains: A,D
HLA class II histocompatibility antigen, DR alpha chain protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 91 237
95 % 62 98 276 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 70 115 237
70 % 70 115 262
50 % 97 173 188
40 % 97 173 201
30 % 200 359 105
Entity #2 | Chains: B,E
MHC class II antigen protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22677
95 % 4 5 8758 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 61 94 307
70 % 98 172 158
50 % 98 174 187
40 % 98 174 199
30 % 201 359 105
Entity #3 | Chains: C,F
peptide protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures