Sequence Similarity Clusters for the Entities in PDB 4H1L

Entity #1 | Chains: A,D
HLA class II histocompatibility antigen, DR alpha chain protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 68 71 230
95 % 75 78 295 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 91 94 237
70 % 91 94 270
50 % 141 146 177
40 % 141 146 193
30 % 293 304 100
Entity #2 | Chains: B,E
MHC class II antigen protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27480
95 % 5 5 7689 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 71 73 342
70 % 132 137 162
50 % 141 146 176
40 % 141 146 192
30 % 294 304 100
Entity #3 | Chains: C,F
mimotope peptide protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: G,I
Ani2.3 TCR A chain protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45402
95 % 1 1 34012 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 32527
70 % 7 7 3722
50 % 11 11 2774
40 % 751 887 5
30 % 835 1013 7
Entity #5 | Chains: H,J
Ani2.3 TCR B chain protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45505
95 % 1 1 34088 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 32598
70 % 1 1 29085
50 % 25 25 1022
40 % 25 25 1034
30 % 836 1013 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.