Sequence Similarity Clusters for the Entities in PDB 4H1L

Entity #1 | Chains: A,D
HLA class II histocompatibility antigen, DR alpha chain protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 67 223
95 % 71 74 289
90 % 87 90 176
70 % 87 90 208
50 % 132 137 170
40 % 132 137 185
30 % 275 286 70
Entity #2 | Chains: B,E
MHC class II antigen protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 24290
95 % 5 5 6728
90 % 69 71 314
70 % 123 128 158
50 % 132 137 169
40 % 132 137 184
30 % 276 286 70
Entity #3 | Chains: C,F
mimotope peptide protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: G,I
Ani2.3 TCR A chain protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 40355
95 % 1 1 30260
90 % 1 1 29000
70 % 7 7 3297
50 % 11 11 2427
40 % 646 733 5
30 % 721 845 8
Entity #5 | Chains: H,J
Ani2.3 TCR B chain protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 40447
95 % 1 1 30327
90 % 1 1 29061
70 % 1 1 26012
50 % 25 25 870
40 % 25 25 898
30 % 722 845 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.