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TCR interaction with peptide mimics of nickel offers structural insights in nickel contact allergy
Sequence Clustering and Redundancy Reduction Results
4H1L
Sequence Clusters for the Sequence Entities in PDB 4H1L
Entity #1: Chains: A,D - HLA class II histocompatibility antigen, DR alpha chain protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 63 221
95% 68 70 289
90% 84 86 175
70% 84 86 203
50% 128 132 154
40% 128 132 172
30% 267 276 62
Entity #2: Chains: B,E - MHC class II antigen protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 22719
95% 5 5 6329
90% 67 68 307
70% 119 123 148
50% 128 132 153
40% 128 132 171
30% 268 276 62
Entity #3: Chains: C,F - mimotope peptide protein, length: 13 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: G,I - Ani2.3 TCR A chain protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 37833
95% 1 1 28456
90% 1 1 27313
70% 7 7 3104
50% 11 11 2278
40% 601 675 6
30% 675 786 8
Entity #5: Chains: H,J - Ani2.3 TCR B chain protein, length: 111 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 37924
95% 1 1 28521
90% 1 1 27373
70% 1 1 24559
50% 25 25 835
40% 25 25 858
30% 676 786 8
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.