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TCR interaction with peptide mimics of nickel offers structural insights in nickel contact allergy
Sequence Clustering and Redundancy Reduction Results
4H1L
Sequence Clusters for the Sequence Entities in PDB 4H1L
Entity #1: Chains: A,D - HLA class II histocompatibility antigen, DR alpha chain protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 63 207
95% 68 70 231
90% 84 86 142
70% 84 86 167
50% 124 128 123
40% 124 128 152
30% 259 268 47
Entity #2: Chains: B,E - MHC class II antigen protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 20762
95% 5 5 5755
90% 67 68 262
70% 116 120 104
50% 124 128 122
40% 124 128 151
30% 260 268 47
Entity #3: Chains: C,F - mimotope peptide protein, length: 13 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: G,I - Ani2.3 TCR A chain protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 34604
95% 1 1 26150
90% 1 1 25168
70% 7 7 2743
50% 11 11 2078
40% 520 576 8
30% 591 684 9
Entity #5: Chains: H,J - Ani2.3 TCR B chain protein, length: 111 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 34688
95% 1 1 26213
90% 1 1 25227
70% 1 1 22746
50% 25 25 714
40% 25 25 729
30% 592 684 9
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.