Sequence Similarity Clusters for the Entities in PDB 4H1L

Entity #1 | Chains: A,D
HLA class II histocompatibility antigen, DR alpha chain protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 79 82 227
95 % 86 89 281 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 102 105 235
70 % 102 105 266
50 % 156 161 184
40 % 156 161 195
30 % 323 334 98
Entity #2 | Chains: B,E
MHC class II antigen protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29124
95 % 5 5 8149 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 82 84 325
70 % 147 152 161
50 % 156 161 183
40 % 156 161 194
30 % 324 334 98
Entity #3 | Chains: C,F
mimotope peptide protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: G,I
Ani2.3 TCR A chain protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47900
95 % 1 1 35805 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 34173
70 % 7 7 3948
50 % 11 11 2927
40 % 810 956 5
30 % 897 1085 7
Entity #5 | Chains: H,J
Ani2.3 TCR B chain protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48004
95 % 1 1 35884 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 34245
70 % 1 1 30426
50 % 25 25 1077
40 % 25 25 1090
30 % 898 1085 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures