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An Information Portal to 105097 Biological Macromolecular Structures

TCR interaction with peptide mimics of nickel offers structural insights in nickel contact allergy
Sequence Clustering and Redundancy Reduction Results
4H1L
Sequence Clusters for the Sequence Entities in PDB 4H1L
Entity #1: Chains: A,D - HLA class II histocompatibility antigen, DR alpha chain protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 63 212
95% 68 70 257
90% 84 86 162
70% 84 86 186
50% 124 128 126
40% 124 128 155
30% 259 268 57
Entity #2: Chains: B,E - MHC class II antigen protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 21258
95% 5 5 5913
90% 67 68 276
70% 116 120 107
50% 124 128 125
40% 124 128 154
30% 260 268 57
Entity #3: Chains: C,F - mimotope peptide protein, length: 13 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: G,I - Ani2.3 TCR A chain protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 35473
95% 1 1 26783
90% 1 1 25757
70% 7 7 2859
50% 11 11 2148
40% 547 605 8
30% 621 716 8
Entity #5: Chains: H,J - Ani2.3 TCR B chain protein, length: 111 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 35559
95% 1 1 26846
90% 1 1 25817
70% 1 1 23270
50% 25 25 777
40% 25 25 794
30% 622 716 8
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.