Sequence Similarity Clusters for the Entities in PDB 4H1L

Entity #1 | Chains: A,D
HLA class II histocompatibility antigen, DR alpha chain protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 67 229
95 % 71 74 299
90 % 87 90 208
70 % 87 90 240
50 % 135 140 175
40 % 135 140 189
30 % 281 292 73
Entity #2 | Chains: B,E
MHC class II antigen protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 25205
95 % 5 5 6983
90 % 69 71 322
70 % 126 131 158
50 % 135 140 174
40 % 135 140 188
30 % 282 292 73
Entity #3 | Chains: C,F
mimotope peptide protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: G,I
Ani2.3 TCR A chain protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41779
95 % 1 1 31288
90 % 1 1 29973
70 % 7 7 3406
50 % 11 11 2520
40 % 679 785 5
30 % 762 910 8
Entity #5 | Chains: H,J
Ani2.3 TCR B chain protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41873
95 % 1 1 31357
90 % 1 1 30036
70 % 1 1 26894
50 % 25 25 922
40 % 25 25 944
30 % 763 910 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.