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TCR interaction with peptide mimics of nickel offers structural insights in nickel contact allergy
Sequence Clustering and Redundancy Reduction Results
4H1L
Sequence Clusters for the Sequence Entities in PDB 4H1L
Entity #1: Chains: A,D - HLA class II histocompatibility antigen, DR alpha chain protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 63 218
95% 68 70 279
90% 84 86 175
70% 84 86 203
50% 128 132 153
40% 128 132 170
30% 267 276 59
Entity #2: Chains: B,E - MHC class II antigen protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 22447
95% 5 5 6254
90% 67 68 299
70% 119 123 147
50% 128 132 152
40% 128 132 169
30% 268 276 59
Entity #3: Chains: C,F - mimotope peptide protein, length: 13 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: G,I - Ani2.3 TCR A chain protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 37453
95% 1 1 28186
90% 1 1 27070
70% 7 7 3042
50% 11 11 2266
40% 591 665 7
30% 665 776 8
Entity #5: Chains: H,J - Ani2.3 TCR B chain protein, length: 111 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 37544
95% 1 1 28251
90% 1 1 27130
70% 1 1 24355
50% 25 25 822
40% 25 25 842
30% 666 776 8
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.