Sequence Similarity Clusters for the Entities in PDB 4H13

Entity #1 | Chains: A
Cytochrome b6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 5955
95 % 4 12 4988 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.4
PDBFlex
90 % 4 12 5010
70 % 4 13 4546
50 % 4 13 4363
40 % 4 13 4155
30 % 4 13 3836
Entity #2 | Chains: B
Cytochrome b6-f complex subunit 4 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 11038
95 % 2 9 6666 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.8
PDBFlex
90 % 4 12 5077
70 % 4 13 4578
50 % 4 13 4391
40 % 4 13 4180
30 % 4 13 3858
Entity #3 | Chains: C
Apocytochrome f protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 5892
95 % 2 9 6551 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 2 9 6546
70 % 3 11 5196
50 % 3 12 4612
40 % 3 12 4373
30 % 3 12 4033
Entity #4 | Chains: D
Cytochrome b6-f complex iron-sulfur subunit protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 10999
95 % 2 9 6652 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.6
PDBFlex
90 % 2 9 6645
70 % 4 12 4926
50 % 4 12 4708
40 % 4 12 4461
30 % 4 12 4101
Entity #5 | Chains: E
Cytochrome b6-f complex subunit 6 protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 6127
95 % 2 9 6769 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 2 9 6759
70 % 2 9 6582
50 % 2 9 6138
40 % 2 9 5739
30 % 2 9 5166
Entity #6 | Chains: F
Cytochrome b6-f complex subunit 7 protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 6125
95 % 2 9 6768 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 2 9 6758
70 % 4 12 5051
50 % 4 12 4818
40 % 4 12 4566
30 % 4 12 4196
Entity #7 | Chains: G
Cytochrome b6-f complex subunit 5 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 6123
95 % 2 9 6766
90 % 2 9 6756
70 % 4 12 5049
50 % 4 12 4817
40 % 4 12 4565
30 % 4 12 4195
Entity #8 | Chains: H
Cytochrome b6-f complex subunit 8 protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 6128
95 % 2 9 6771 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 2 9 6761
70 % 4 12 5056
50 % 4 12 4823
40 % 4 12 4571
30 % 4 12 4201

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures