Sequence Similarity Clusters for the Entities in PDB 4H13

Entity #1 | Chains: A
Cytochrome b6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 6911
95 % 4 12 5203 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 4 12 5227
70 % 4 13 4965
50 % 4 13 4702
40 % 4 13 4443
30 % 4 13 3993
Entity #2 | Chains: B
Cytochrome b6-f complex subunit 4 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 6912
95 % 2 9 7043 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.8
PDBFlex
90 % 4 12 5226
70 % 4 13 4944
50 % 4 13 4687
40 % 4 13 4429
30 % 4 13 3992
Entity #3 | Chains: C
Apocytochrome f protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 6960
95 % 2 9 7091 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 2 9 7056
70 % 3 11 5714
50 % 3 12 5047
40 % 3 12 4750
30 % 3 12 4258
Entity #4 | Chains: D
Cytochrome b6-f complex iron-sulfur subunit protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 6913
95 % 2 9 7044 Flexibility: Medium
Max RMSD: 3.0, Avg RMSD: 3.0
PDBFlex
90 % 2 9 7008
70 % 4 12 5092
50 % 4 12 4833
40 % 4 12 4550
30 % 4 12 4082
Entity #5 | Chains: E
Cytochrome b6-f complex subunit 6 protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 6914
95 % 2 9 7045 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 2 9 7009
70 % 2 9 6794
50 % 2 9 6287
40 % 2 9 5839
30 % 2 9 5114
Entity #6 | Chains: F
Cytochrome b6-f complex subunit 7 protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 6915
95 % 2 9 7046 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 2 9 7010
70 % 4 12 5090
50 % 4 12 4831
40 % 4 12 4548
30 % 4 12 4080
Entity #7 | Chains: G
Cytochrome b6-f complex subunit 5 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 6916
95 % 2 9 7047 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 2 9 7011
70 % 4 12 5091
50 % 4 12 4832
40 % 4 12 4549
30 % 4 12 4081
Entity #8 | Chains: H
Cytochrome b6-f complex subunit 8 protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 6910
95 % 2 9 7042 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 2 9 7007
70 % 4 12 5089
50 % 4 13 4545
40 % 4 13 4296
30 % 4 13 3875

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures