Sequence Similarity Clusters for the Entities in PDB 4H13

Entity #1 | Chains: A
Cytochrome b6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 5589
95 % 4 12 4649 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 4 12 4666
70 % 4 13 4282
50 % 4 13 4125
40 % 4 13 3937
30 % 4 13 3627
Entity #2 | Chains: B
Cytochrome b6-f complex subunit 4 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 10359
95 % 2 9 6297 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.5
PDBFlex
90 % 4 12 4728
70 % 4 13 4309
50 % 4 13 4150
40 % 4 13 3963
30 % 4 13 3650
Entity #3 | Chains: C
Apocytochrome f protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 5529
95 % 2 9 6189 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 2 9 6171
70 % 3 11 4875
50 % 3 12 4345
40 % 3 12 4132
30 % 3 12 3806
Entity #4 | Chains: D
Cytochrome b6-f complex iron-sulfur subunit protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 10323
95 % 2 9 6282 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.5
PDBFlex
90 % 2 9 6266
70 % 4 12 4619
50 % 4 12 4437
40 % 4 12 4214
30 % 4 12 3873
Entity #5 | Chains: E
Cytochrome b6-f complex subunit 6 protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 5753
95 % 2 9 6388 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.3
PDBFlex
90 % 2 9 6371
70 % 2 9 6204
50 % 2 9 5791
40 % 2 9 5415
30 % 2 9 4878
Entity #6 | Chains: F
Cytochrome b6-f complex subunit 7 protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 5751
95 % 2 9 6387 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 2 9 6370
70 % 4 12 4743
50 % 4 12 4549
40 % 4 12 4319
30 % 4 12 3967
Entity #7 | Chains: G
Cytochrome b6-f complex subunit 5 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 5749
95 % 2 9 6385 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 2.3
PDBFlex
90 % 2 9 6367
70 % 4 12 4741
50 % 4 12 4548
40 % 4 12 4318
30 % 4 12 3966
Entity #8 | Chains: H
Cytochrome b6-f complex subunit 8 protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 5754
95 % 2 9 6390 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 2 9 6373
70 % 4 12 4747
50 % 4 12 4554
40 % 4 12 4324
30 % 4 12 3972

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.