Sequence Similarity Clusters for the Entities in PDB 4H13

Entity #1 | Chains: A
Cytochrome b6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 6428
95 % 4 12 4845 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 4 12 4884
70 % 4 13 4639
50 % 4 13 4455
40 % 4 13 4207
30 % 4 13 3799
Entity #2 | Chains: B
Cytochrome b6-f complex subunit 4 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 6429
95 % 2 9 6575 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.8
PDBFlex
90 % 4 12 4883
70 % 4 13 4620
50 % 4 13 4439
40 % 4 13 4206
30 % 4 13 3798
Entity #3 | Chains: C
Apocytochrome f protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 6471
95 % 2 9 6621 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 2 9 6608
70 % 3 11 5369
50 % 3 12 4767
40 % 3 12 4495
30 % 3 12 4049
Entity #4 | Chains: D
Cytochrome b6-f complex iron-sulfur subunit protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 6430
95 % 2 9 6576 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.5
PDBFlex
90 % 2 9 6563
70 % 4 12 4757
50 % 4 12 4561
40 % 4 12 4300
30 % 4 12 3879
Entity #5 | Chains: E
Cytochrome b6-f complex subunit 6 protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 6431
95 % 2 9 6577 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.3
PDBFlex
90 % 2 9 6564
70 % 2 9 6370
50 % 2 9 5944
40 % 2 9 5534
30 % 2 9 4855
Entity #6 | Chains: F
Cytochrome b6-f complex subunit 7 protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 6432
95 % 2 9 6578 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 2 9 6565
70 % 4 12 4755
50 % 4 12 4559
40 % 4 12 4298
30 % 4 12 3877
Entity #7 | Chains: G
Cytochrome b6-f complex subunit 5 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 6433
95 % 2 9 6579 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 2.3
PDBFlex
90 % 2 9 6566
70 % 4 12 4756
50 % 4 12 4560
40 % 4 12 4299
30 % 4 12 3878
Entity #8 | Chains: H
Cytochrome b6-f complex subunit 8 protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 6427
95 % 2 9 6574 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 2 9 6562
70 % 4 12 4754
50 % 4 13 4297
40 % 4 13 4068
30 % 4 13 3685

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures