Sequence Similarity Clusters for the Entities in PDB 4H13

Entity #1 | Chains: A
Cytochrome b6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 5825
95 % 4 12 4864 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.4
PDBFlex
90 % 4 12 4884
70 % 4 13 4445
50 % 4 13 4272
40 % 4 13 4078
30 % 4 13 3762
Entity #2 | Chains: B
Cytochrome b6-f complex subunit 4 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 10771
95 % 2 9 6535 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.8
PDBFlex
90 % 4 12 4953
70 % 4 13 4475
50 % 4 13 4299
40 % 4 13 4103
30 % 4 13 3782
Entity #3 | Chains: C
Apocytochrome f protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 5765
95 % 2 9 6426 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 2 9 6411
70 % 3 11 5077
50 % 3 12 4517
40 % 3 12 4295
30 % 3 12 3948
Entity #4 | Chains: D
Cytochrome b6-f complex iron-sulfur subunit protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 10732
95 % 2 9 6521 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.6
PDBFlex
90 % 2 9 6505
70 % 4 12 4808
50 % 4 12 4610
40 % 4 12 4377
30 % 4 12 4015
Entity #5 | Chains: E
Cytochrome b6-f complex subunit 6 protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 5989
95 % 2 9 6632 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 2 9 6614
70 % 2 9 6450
50 % 2 9 6018
40 % 2 9 5632
30 % 2 9 5063
Entity #6 | Chains: F
Cytochrome b6-f complex subunit 7 protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 5987
95 % 2 9 6631 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 2 9 6613
70 % 4 12 4934
50 % 4 12 4722
40 % 4 12 4482
30 % 4 12 4111
Entity #7 | Chains: G
Cytochrome b6-f complex subunit 5 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 5985
95 % 2 9 6629
90 % 2 9 6611
70 % 4 12 4932
50 % 4 12 4721
40 % 4 12 4481
30 % 4 12 4110
Entity #8 | Chains: H
Cytochrome b6-f complex subunit 8 protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 5990
95 % 2 9 6634 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 2 9 6616
70 % 4 12 4939
50 % 4 12 4727
40 % 4 12 4487
30 % 4 12 4116

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures