Sequence Similarity Clusters for the Entities in PDB 4H13

Entity #1 | Chains: A
Cytochrome b6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 5671
95 % 4 12 4738 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 4 12 4756
70 % 4 13 4349
50 % 4 13 4184
40 % 4 13 3999
30 % 4 13 3689
Entity #2 | Chains: B
Cytochrome b6-f complex subunit 4 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 10514
95 % 2 9 6384 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.5
PDBFlex
90 % 4 12 4825
70 % 4 13 4379
50 % 4 13 4211
40 % 4 13 4024
30 % 4 13 3712
Entity #3 | Chains: C
Apocytochrome f protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 5612
95 % 2 9 6276 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 2 9 6259
70 % 3 11 4962
50 % 3 12 4415
40 % 3 12 4203
30 % 3 12 3873
Entity #4 | Chains: D
Cytochrome b6-f complex iron-sulfur subunit protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 10475
95 % 2 9 6370 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.5
PDBFlex
90 % 2 9 6354
70 % 4 12 4693
50 % 4 12 4508
40 % 4 12 4283
30 % 4 12 3938
Entity #5 | Chains: E
Cytochrome b6-f complex subunit 6 protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 5833
95 % 2 9 6479
90 % 2 9 6459
70 % 2 9 6313
50 % 2 9 5887
40 % 2 9 5511
30 % 2 9 4960
Entity #6 | Chains: F
Cytochrome b6-f complex subunit 7 protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 5831
95 % 2 9 6478 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 2 9 6458
70 % 4 12 4823
50 % 4 12 4624
40 % 4 12 4391
30 % 4 12 4035
Entity #7 | Chains: G
Cytochrome b6-f complex subunit 5 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 5829
95 % 2 9 6476 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 2.4
PDBFlex
90 % 2 9 6456
70 % 4 12 4821
50 % 4 12 4623
40 % 4 12 4390
30 % 4 12 4034
Entity #8 | Chains: H
Cytochrome b6-f complex subunit 8 protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 5834
95 % 2 9 6481 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 2 9 6461
70 % 4 12 4828
50 % 4 12 4628
40 % 4 12 4395
30 % 4 12 4039

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.