Sequence Similarity Clusters for the Entities in PDB 4H0L

Entity #1 | Chains: A
Cytochrome b6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 5525
95 % 9 12 4607 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.4
PDBFlex
90 % 9 12 4625
70 % 10 13 4235
50 % 10 13 4091
40 % 10 13 3908
30 % 10 13 3600
Entity #2 | Chains: B
Cytochrome b6-f complex subunit 4 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 10283
95 % 6 9 6227 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.5
PDBFlex
90 % 9 12 4686
70 % 10 13 4263
50 % 10 13 4117
40 % 10 13 3934
30 % 10 13 3623
Entity #3 | Chains: C
Apocytochrome f protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 5466
95 % 6 9 6117 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 6 9 6101
70 % 8 11 4828
50 % 9 12 4311
40 % 9 12 4100
30 % 9 12 3776
Entity #4 | Chains: D
Cytochrome b6-f complex iron-sulfur subunit protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 10249
95 % 6 9 6212 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.6
PDBFlex
90 % 6 9 6198
70 % 9 12 4575
50 % 9 12 4402
40 % 9 12 4181
30 % 9 12 3843
Entity #5 | Chains: E
Cytochrome b6-f complex subunit 6 protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 5703
95 % 6 9 6334 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.5
PDBFlex
90 % 6 9 6316
70 % 6 9 6154
50 % 6 9 5751
40 % 6 9 5377
30 % 6 9 4845
Entity #6 | Chains: F
Cytochrome b6-f complex subunit 7 protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 5701
95 % 6 9 6333
90 % 6 9 6315
70 % 9 12 4693
50 % 9 12 4508
40 % 9 12 4282
30 % 9 12 3934
Entity #7 | Chains: G
Cytochrome b6-f complex subunit 5 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 5699
95 % 6 9 6331 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 2.4
PDBFlex
90 % 6 9 6312
70 % 9 12 4691
50 % 9 12 4507
40 % 9 12 4281
30 % 9 12 3933
Entity #8 | Chains: H
Cytochrome b6-f complex subunit 8 protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 5704
95 % 6 9 6336 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.7
PDBFlex
90 % 6 9 6318
70 % 9 12 4697
50 % 9 12 4513
40 % 9 12 4287
30 % 9 12 3939

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.