Sequence Similarity Clusters for the Entities in PDB 4H0L

Entity #1 | Chains: A
Cytochrome b6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 6354
95 % 9 12 4791 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.4
PDBFlex
90 % 9 12 4832
70 % 10 13 4584
50 % 10 13 4403
40 % 10 13 4155
30 % 10 13 3763
Entity #2 | Chains: B
Cytochrome b6-f complex subunit 4 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 6355
95 % 6 9 6504 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.8
PDBFlex
90 % 9 12 4831
70 % 10 13 4583
50 % 10 13 4402
40 % 10 13 4154
30 % 10 13 3762
Entity #3 | Chains: C
Apocytochrome f protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 6399
95 % 6 9 6548 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 6 9 6542
70 % 8 11 5295
50 % 9 12 4708
40 % 9 12 4436
30 % 9 12 4002
Entity #4 | Chains: D
Cytochrome b6-f complex iron-sulfur subunit protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 6356
95 % 6 9 6505 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.6
PDBFlex
90 % 6 9 6498
70 % 9 12 4704
50 % 9 12 4511
40 % 9 12 4249
30 % 9 12 3841
Entity #5 | Chains: E
Cytochrome b6-f complex subunit 6 protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 6357
95 % 6 9 6506 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 6 9 6499
70 % 6 9 6296
50 % 6 9 5883
40 % 6 9 5474
30 % 6 9 4810
Entity #6 | Chains: F
Cytochrome b6-f complex subunit 7 protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 6358
95 % 6 9 6507 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 6 9 6500
70 % 9 12 4702
50 % 9 12 4509
40 % 9 12 4247
30 % 9 12 3839
Entity #7 | Chains: G
Cytochrome b6-f complex subunit 5 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 6359
95 % 6 9 6508 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 2.4
PDBFlex
90 % 6 9 6501
70 % 9 12 4703
50 % 9 12 4510
40 % 9 12 4248
30 % 9 12 3840
Entity #8 | Chains: H
Cytochrome b6-f complex subunit 8 protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 6353
95 % 6 9 6503 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 6 9 6497
70 % 9 12 4701
50 % 10 13 4257
40 % 10 13 4024
30 % 10 13 3657

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures