Sequence Similarity Clusters for the Entities in PDB 4H0L

Entity #1 | Chains: A
Cytochrome b6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 5866
95 % 9 12 4919 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.4
PDBFlex
90 % 9 12 4936
70 % 10 13 4485
50 % 10 13 4305
40 % 10 13 4111
30 % 10 13 3792
Entity #2 | Chains: B
Cytochrome b6-f complex subunit 4 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 10860
95 % 6 9 6576 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.8
PDBFlex
90 % 9 12 5004
70 % 10 13 4515
50 % 10 13 4332
40 % 10 13 4135
30 % 10 13 3812
Entity #3 | Chains: C
Apocytochrome f protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 5806
95 % 6 9 6465 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 6 9 6451
70 % 8 11 5123
50 % 9 12 4554
40 % 9 12 4329
30 % 9 12 3981
Entity #4 | Chains: D
Cytochrome b6-f complex iron-sulfur subunit protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 10820
95 % 6 9 6562 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.6
PDBFlex
90 % 6 9 6546
70 % 9 12 4854
50 % 9 12 4647
40 % 9 12 4414
30 % 9 12 4049
Entity #5 | Chains: E
Cytochrome b6-f complex subunit 6 protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 6038
95 % 6 9 6675 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 6 9 6657
70 % 6 9 6489
50 % 6 9 6054
40 % 6 9 5666
30 % 6 9 5094
Entity #6 | Chains: F
Cytochrome b6-f complex subunit 7 protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 6036
95 % 6 9 6674 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 6 9 6656
70 % 9 12 4980
50 % 9 12 4759
40 % 9 12 4519
30 % 9 12 4144
Entity #7 | Chains: G
Cytochrome b6-f complex subunit 5 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 6034
95 % 6 9 6672 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 2.4
PDBFlex
90 % 6 9 6654
70 % 9 12 4978
50 % 9 12 4758
40 % 9 12 4518
30 % 9 12 4143
Entity #8 | Chains: H
Cytochrome b6-f complex subunit 8 protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 6039
95 % 6 9 6677 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 6 9 6659
70 % 9 12 4985
50 % 9 12 4764
40 % 9 12 4524
30 % 9 12 4149

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures