Sequence Similarity Clusters for the Entities in PDB 4H0L

Entity #1 | Chains: A
Cytochrome b6 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 5732
95 % 9 12 4786 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.4
PDBFlex
90 % 9 12 4802
70 % 10 13 4386
50 % 10 13 4215
40 % 10 13 4025
30 % 10 13 3716
Entity #2 | Chains: B
Cytochrome b6-f complex subunit 4 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 10603
95 % 6 9 6445 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.8
PDBFlex
90 % 9 12 4870
70 % 10 13 4414
50 % 10 13 4241
40 % 10 13 4049
30 % 10 13 3739
Entity #3 | Chains: C
Apocytochrome f protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 5672
95 % 6 9 6337 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 6 9 6321
70 % 8 11 5001
50 % 9 12 4446
40 % 9 12 4232
30 % 9 12 3900
Entity #4 | Chains: D
Cytochrome b6-f complex iron-sulfur subunit protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 10564
95 % 6 9 6431 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 2.6
PDBFlex
90 % 6 9 6413
70 % 9 12 4730
50 % 9 12 4538
40 % 9 12 4312
30 % 9 12 3964
Entity #5 | Chains: E
Cytochrome b6-f complex subunit 6 protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 5894
95 % 6 9 6541 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 6 9 6519
70 % 6 9 6365
50 % 6 9 5935
40 % 6 9 5555
30 % 6 9 4997
Entity #6 | Chains: F
Cytochrome b6-f complex subunit 7 protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 5892
95 % 6 9 6540 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.8
PDBFlex
90 % 6 9 6518
70 % 9 12 4861
50 % 9 12 4655
40 % 9 12 4420
30 % 9 12 4061
Entity #7 | Chains: G
Cytochrome b6-f complex subunit 5 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 5890
95 % 6 9 6538 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 2.4
PDBFlex
90 % 6 9 6516
70 % 9 12 4859
50 % 9 12 4654
40 % 9 12 4419
30 % 9 12 4060
Entity #8 | Chains: H
Cytochrome b6-f complex subunit 8 protein, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 5895
95 % 6 9 6543 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 6 9 6521
70 % 9 12 4866
50 % 9 12 4659
40 % 9 12 4424
30 % 9 12 4065

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.