Sequence Similarity Clusters for the Entities in PDB 4H0E

Entity #1 | Chains: A,B
Arabinose metabolism transcriptional repressor protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 7089
95 % 2 5 7664 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 1.3
PDBFlex
90 % 2 5 7611
70 % 2 5 7409
50 % 2 5 6828
40 % 3 6 4550
30 % 3 6 4184
Entity #2 | Chains: U
5'-D(*AP*AP*AP*TP*TP*TP*GP*TP*CP*CP*GP*TP*AP*CP*AP*TP*TP*TP*TP*AP*T)-3' dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: T
5'-D(*TP*AP*TP*AP*AP*AP*AP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*AP*AP*TP*T)-3' dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures