Sequence Similarity Clusters for the Entities in PDB 4GZZ

Entity #1 | Chains: A,B
DNA-directed RNA polymerase subunit alpha protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 44 186
95 % 39 44 247 Flexibility: Low
Max RMSD: 7.1, Avg RMSD: 1.4
PDBFlex
90 % 39 44 262
70 % 45 57 208
50 % 45 57 248
40 % 63 93 156
30 % 64 94 168
Entity #2 | Chains: C
DNA-directed RNA polymerase subunit beta protein, length: 1119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 44 460
95 % 39 44 636
90 % 45 57 459
70 % 45 57 498
50 % 58 71 493
40 % 58 71 531
30 % 58 71 529
Entity #3 | Chains: D
DNA-directed RNA polymerase subunit beta' protein, length: 1534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 44 459
95 % 39 44 635
90 % 43 54 469
70 % 43 54 511
50 % 43 54 572
40 % 43 54 613
30 % 43 54 600
Entity #4 | Chains: E
DNA-directed RNA polymerase subunit omega protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 31 754
95 % 39 44 644 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 45 56 478
70 % 45 56 522
50 % 45 56 580
40 % 45 56 615
30 % 45 56 605
Entity #5 | Chains: N
non-template DNA dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: R
RNA transcript rna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: T
template DNA dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.