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Crystal structures of bacterial RNA Polymerase paused elongation complexes
Sequence Clustering and Redundancy Reduction Results
4GZZ
Sequence Clusters for the Sequence Entities in PDB 4GZZ
Entity #1: Chains: A,B - DNA-directed RNA polymerase subunit alpha protein, length: 315 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 30 191
95% 28 30 271
90% 28 30 282
70% 32 37 226
50% 32 37 268
40% 36 48 209
30% 37 49 226
Entity #2: Chains: C - DNA-directed RNA polymerase subunit beta protein, length: 1119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 30 436
95% 28 30 629
90% 32 37 563
70% 32 37 597
50% 32 37 637
40% 32 37 665
30% 32 37 664
Entity #3: Chains: D - DNA-directed RNA polymerase subunit beta' protein, length: 1534 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 30 435
95% 28 30 628
90% 30 34 569
70% 30 34 601
50% 30 34 646
40% 30 34 673
30% 30 34 675
Entity #4: Chains: E - DNA-directed RNA polymerase subunit omega protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 19 933
95% 28 30 647
90% 32 36 581
70% 32 36 614
50% 32 36 666
40% 32 36 691
30% 32 36 691
Entity #5: Chains: N - non-template DNA dna, length: 13 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #6: Chains: R - RNA transcript rna, length: 16 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #7: Chains: T - template DNA dna, length: 22 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.