Sequence Similarity Clusters for the Entities in PDB 4GZZ

Entity #1 | Chains: A,B
DNA-directed RNA polymerase subunit alpha protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 42 181
95 % 37 42 247
90 % 37 42 259
70 % 42 54 203
50 % 42 54 244
40 % 57 83 167
30 % 58 84 183
Entity #2 | Chains: C
DNA-directed RNA polymerase subunit beta protein, length: 1119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 42 446
95 % 37 42 626
90 % 42 54 458
70 % 42 54 491
50 % 54 67 482
40 % 54 67 521
30 % 54 67 523
Entity #3 | Chains: D
DNA-directed RNA polymerase subunit beta' protein, length: 1534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 42 445
95 % 37 42 625
90 % 40 51 468
70 % 40 51 502
50 % 40 51 565
40 % 40 51 608
30 % 40 51 607
Entity #4 | Chains: E
DNA-directed RNA polymerase subunit omega protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 29 775
95 % 37 42 637
90 % 42 53 479
70 % 42 53 514
50 % 42 53 579
40 % 42 53 613
30 % 42 53 616
Entity #5 | Chains: N
non-template DNA dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: R
RNA transcript rna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: T
template DNA dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.