Sequence Similarity Clusters for the Entities in PDB 4GZZ

Entity #1 | Chains: A,B
DNA-directed RNA polymerase subunit alpha protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 46 205
95 % 41 46 262 Flexibility: Low
Max RMSD: 7.1, Avg RMSD: 1.4
PDBFlex
90 % 41 46 273
70 % 47 59 238
50 % 47 59 260
40 % 79 119 143
30 % 80 120 155
Entity #2 | Chains: C
DNA-directed RNA polymerase subunit beta protein, length: 1119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 46 510
95 % 41 46 638 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.8
PDBFlex
90 % 47 59 513
70 % 47 59 553
50 % 60 78 477
40 % 87 142 244
30 % 187 308 143
Entity #3 | Chains: D
DNA-directed RNA polymerase subunit beta' protein, length: 1534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 46 509
95 % 41 46 637 Flexibility: Medium
Max RMSD: 11.7, Avg RMSD: 6.5
PDBFlex
90 % 45 56 521
70 % 47 59 533
50 % 60 78 470
40 % 87 142 240
30 % 87 142 254
Entity #4 | Chains: E
DNA-directed RNA polymerase subunit omega protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 33 850
95 % 41 46 644 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.2
PDBFlex
90 % 47 58 522
70 % 47 58 561
50 % 47 58 593
40 % 47 58 632
30 % 47 58 631
Entity #5 | Chains: N
non-template DNA dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: R
RNA transcript rna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: T
template DNA dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures