Sequence Similarity Clusters for the Entities in PDB 4GZZ

Entity #1 | Chains: A,B
DNA-directed RNA polymerase subunit alpha protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 44 176
95 % 39 44 237 Flexibility: Low
Max RMSD: 7.1, Avg RMSD: 1.4
PDBFlex
90 % 39 44 251
70 % 45 57 196
50 % 45 57 239
40 % 63 91 153
30 % 64 92 167
Entity #2 | Chains: C
DNA-directed RNA polymerase subunit beta protein, length: 1119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 44 439
95 % 39 44 612 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.8
PDBFlex
90 % 45 57 431
70 % 45 57 476
50 % 57 70 482
40 % 57 70 517
30 % 57 70 516
Entity #3 | Chains: D
DNA-directed RNA polymerase subunit beta' protein, length: 1534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 44 438
95 % 39 44 611 Flexibility: Medium
Max RMSD: 11.0, Avg RMSD: 6.4
PDBFlex
90 % 43 54 440
70 % 43 54 483
50 % 43 54 552
40 % 43 54 591
30 % 43 54 582
Entity #4 | Chains: E
DNA-directed RNA polymerase subunit omega protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 31 730
95 % 39 44 618 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 45 56 451
70 % 45 56 489
50 % 45 56 556
40 % 45 56 593
30 % 45 56 587
Entity #5 | Chains: N
non-template DNA dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: R
RNA transcript rna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: T
template DNA dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.