Sequence Similarity Clusters for the Entities in PDB 4GZZ

Entity #1 | Chains: A,B
DNA-directed RNA polymerase subunit alpha protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 45 207
95 % 40 45 256 Flexibility: Low
Max RMSD: 7.1, Avg RMSD: 1.4
PDBFlex
90 % 40 45 266
70 % 46 141 223
50 % 46 183 251
40 % 78 109 146
30 % 79 110 164
Entity #2 | Chains: C
DNA-directed RNA polymerase subunit beta protein, length: 1119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 45 504
95 % 40 45 629
90 % 46 58 502
70 % 46 58 539
50 % 59 72 498
40 % 86 130 245
30 % 179 286 148
Entity #3 | Chains: D
DNA-directed RNA polymerase subunit beta' protein, length: 1534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 45 503
95 % 40 45 628
90 % 44 55 509
70 % 46 58 518
50 % 59 72 482
40 % 86 130 244
30 % 86 191 261
Entity #4 | Chains: E
DNA-directed RNA polymerase subunit omega protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 27 32 842
95 % 40 45 642 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 46 57 510
70 % 46 57 546
50 % 46 57 585
40 % 46 57 624
30 % 46 57 621
Entity #5 | Chains: N
non-template DNA dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: R
RNA transcript rna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: T
template DNA dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures