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Crystal structures of bacterial RNA Polymerase paused elongation complexes
Sequence Clustering and Redundancy Reduction Results
4GZZ
Sequence Clusters for the Sequence Entities in PDB 4GZZ
Entity #1: Chains: A,B - DNA-directed RNA polymerase subunit alpha protein, length: 315 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 32 183
95% 28 32 252
90% 28 32 264
70% 32 39 223
50% 32 39 269
40% 39 54 204
30% 40 55 221
Entity #2: Chains: C - DNA-directed RNA polymerase subunit beta protein, length: 1119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 32 422
95% 28 32 604
90% 32 39 534
70% 32 39 582
50% 32 39 653
40% 32 39 686
30% 32 39 694
Entity #3: Chains: D - DNA-directed RNA polymerase subunit beta' protein, length: 1534 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 32 421
95% 28 32 603
90% 30 36 549
70% 30 36 600
50% 30 36 678
40% 30 36 704
30% 30 36 708
Entity #4: Chains: E - DNA-directed RNA polymerase subunit omega protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 21 866
95% 28 32 630
90% 32 38 563
70% 32 38 614
50% 32 38 688
40% 32 38 718
30% 32 38 718
Entity #5: Chains: N - non-template DNA dna, length: 13 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #6: Chains: R - RNA transcript rna, length: 16 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #7: Chains: T - template DNA dna, length: 22 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.