Sequence Similarity Clusters for the Entities in PDB 4GZY

Entity #1 | Chains: A,B
DNA-directed RNA polymerase subunit alpha protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 40 177
95 % 34 40 245
90 % 34 40 254
70 % 37 52 200
50 % 37 52 241
40 % 43 78 171
30 % 44 79 186
Entity #2 | Chains: C
DNA-directed RNA polymerase subunit beta protein, length: 1119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 40 441
95 % 34 40 625
90 % 37 52 457
70 % 37 52 497
50 % 38 53 549
40 % 38 53 594
30 % 38 53 591
Entity #3 | Chains: D
DNA-directed RNA polymerase subunit beta' protein, length: 1534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 40 440
95 % 34 40 624
90 % 36 49 468
70 % 36 49 508
50 % 36 49 570
40 % 36 49 603
30 % 36 49 603
Entity #4 | Chains: E
DNA-directed RNA polymerase subunit omega protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 27 778
95 % 34 40 638
90 % 37 51 474
70 % 37 51 518
50 % 37 51 575
40 % 37 51 605
30 % 37 51 608
Entity #5 | Chains: N
non-template DNA dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: R
RNA transcript rna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: T
template DNA dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.