Sequence Similarity Clusters for the Entities in PDB 4GZY

Entity #1 | Chains: A,B
DNA-directed RNA polymerase subunit alpha protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 40 181
95 % 34 40 250
90 % 34 40 259
70 % 37 52 215
50 % 37 52 247
40 % 43 79 170
30 % 44 80 187
Entity #2 | Chains: C
DNA-directed RNA polymerase subunit beta protein, length: 1119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 40 453
95 % 34 40 642
90 % 37 52 466
70 % 37 52 505
50 % 38 53 554
40 % 38 53 600
30 % 38 53 596
Entity #3 | Chains: D
DNA-directed RNA polymerase subunit beta' protein, length: 1534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 40 452
95 % 34 40 641
90 % 36 49 477
70 % 36 49 516
50 % 36 49 576
40 % 36 49 609
30 % 36 49 610
Entity #4 | Chains: E
DNA-directed RNA polymerase subunit omega protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 27 798
95 % 34 40 654
90 % 37 51 483
70 % 37 51 526
50 % 37 51 581
40 % 37 51 612
30 % 37 51 615
Entity #5 | Chains: N
non-template DNA dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: R
RNA transcript rna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: T
template DNA dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.