Sequence Similarity Clusters for the Entities in PDB 4GZY

Entity #1 | Chains: A,B
DNA-directed RNA polymerase subunit alpha protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 40 175
95 % 34 40 243
90 % 34 40 252
70 % 37 52 194
50 % 37 52 237
40 % 43 77 174
30 % 44 78 187
Entity #2 | Chains: C
DNA-directed RNA polymerase subunit beta protein, length: 1119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 40 436
95 % 34 40 619
90 % 37 52 433
70 % 37 52 476
50 % 38 53 546
40 % 38 53 590
30 % 38 53 588
Entity #3 | Chains: D
DNA-directed RNA polymerase subunit beta' protein, length: 1534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 40 435
95 % 34 40 618
90 % 36 49 440
70 % 36 49 488
50 % 36 49 565
40 % 36 49 599
30 % 36 49 600
Entity #4 | Chains: E
DNA-directed RNA polymerase subunit omega protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 27 773
95 % 34 40 634
90 % 37 51 449
70 % 37 51 497
50 % 37 51 571
40 % 37 51 602
30 % 37 51 607
Entity #5 | Chains: N
non-template DNA dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: R
RNA transcript rna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: T
template DNA dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.