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An Information Portal to 110790 Biological Macromolecular Structures

Crystal structures of bacterial RNA Polymerase paused elongation complexes
Sequence Clustering and Redundancy Reduction Results
4GZY
Sequence Clusters for the Sequence Entities in PDB 4GZY
Entity #1: Chains: A,B - DNA-directed RNA polymerase subunit alpha protein, length: 315 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 32 186
95% 27 32 259
90% 27 32 271
70% 30 39 224
50% 30 39 271
40% 34 54 208
30% 35 55 221
Entity #2: Chains: C - DNA-directed RNA polymerase subunit beta protein, length: 1119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 32 429
95% 27 32 617
90% 30 39 542
70% 30 39 590
50% 30 39 667
40% 30 39 697
30% 30 39 707
Entity #3: Chains: D - DNA-directed RNA polymerase subunit beta' protein, length: 1534 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 32 428
95% 27 32 616
90% 29 36 557
70% 29 36 608
50% 29 36 689
40% 29 36 713
30% 29 36 723
Entity #4: Chains: E - DNA-directed RNA polymerase subunit omega protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 21 880
95% 27 32 643
90% 30 38 570
70% 30 38 621
50% 30 38 697
40% 30 38 727
30% 30 38 730
Entity #5: Chains: N - non-template DNA dna, length: 13 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #6: Chains: R - RNA transcript rna, length: 29 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #7: Chains: T - template DNA dna, length: 22 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.