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Crystal structures of bacterial RNA Polymerase paused elongation complexes
Sequence Clustering and Redundancy Reduction Results
4GZY
Sequence Clusters for the Sequence Entities in PDB 4GZY
Entity #1: Chains: A,B - DNA-directed RNA polymerase subunit alpha protein, length: 315 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 30 192
95% 27 30 273
90% 27 30 284
70% 30 37 228
50% 30 37 269
40% 31 48 210
30% 32 49 228
Entity #2: Chains: C - DNA-directed RNA polymerase subunit beta protein, length: 1119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 30 440
95% 27 30 636
90% 30 37 569
70% 30 37 604
50% 30 37 643
40% 30 37 671
30% 30 37 676
Entity #3: Chains: D - DNA-directed RNA polymerase subunit beta' protein, length: 1534 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 30 439
95% 27 30 635
90% 29 34 577
70% 29 34 608
50% 29 34 654
40% 29 34 679
30% 29 34 686
Entity #4: Chains: E - DNA-directed RNA polymerase subunit omega protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 19 941
95% 27 30 651
90% 30 36 587
70% 30 36 620
50% 30 36 674
40% 30 36 698
30% 30 36 702
Entity #5: Chains: N - non-template DNA dna, length: 13 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #6: Chains: R - RNA transcript rna, length: 29 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #7: Chains: T - template DNA dna, length: 22 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.