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Crystal structures of bacterial RNA Polymerase paused elongation complexes
Sequence Clustering and Redundancy Reduction Results
4GZY
Sequence Clusters for the Sequence Entities in PDB 4GZY
Entity #1: Chains: A,B - DNA-directed RNA polymerase subunit alpha protein, length: 315 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 30 196
95% 27 30 279
90% 27 30 292
70% 30 37 231
50% 30 37 283
40% 31 48 224
30% 32 49 239
Entity #2: Chains: C - DNA-directed RNA polymerase subunit beta protein, length: 1119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 30 460
95% 27 30 654
90% 30 37 576
70% 30 37 624
50% 30 37 690
40% 30 37 724
30% 30 37 724
Entity #3: Chains: D - DNA-directed RNA polymerase subunit beta' protein, length: 1534 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 30 459
95% 27 30 653
90% 29 34 585
70% 29 34 631
50% 29 34 704
40% 29 34 732
30% 29 34 734
Entity #4: Chains: E - DNA-directed RNA polymerase subunit omega protein, length: 99 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 19 1032
95% 27 30 673
90% 30 36 597
70% 30 36 645
50% 30 36 729
40% 30 36 755
30% 30 36 755
Entity #5: Chains: N - non-template DNA dna, length: 13 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #6: Chains: R - RNA transcript rna, length: 29 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #7: Chains: T - template DNA dna, length: 22 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.