Sequence Similarity Clusters for the Entities in PDB 4GYQ

Entity #1 | Chains: A,B,C,D
Beta-lactamase NDM-1 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20515
95 % 9 39 569 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.0
PDBFlex
90 % 9 43 539
70 % 9 43 579
50 % 9 43 623
40 % 9 43 656
30 % 22 195 156

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.