Sequence Similarity Clusters for the Entities in PDB 4GYP

Entity #1 | Chains: A,B
Glucarate dehydratase protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 2865
95 % 3 9 1939 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 9 1985
70 % 4 11 1646
50 % 8 22 720
40 % 8 22 746
30 % 116 238 29
Entity #2 | Chains: C,D
Glucarate dehydratase-related protein protein, length: 458 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33640
95 % 1 2 6894 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 1 2 6882
70 % 1 5 2879
50 % 9 22 720
40 % 9 22 746
30 % 117 238 29

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures