Sequence Similarity Clusters for the Entities in PDB 4GYP

Entity #1 | Chains: A,B
Glucarate dehydratase protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 1941
95 % 3 9 1996 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 9 2036
70 % 4 11 1720
50 % 8 22 731
40 % 8 22 756
30 % 135 262 29
Entity #2 | Chains: C,D
Glucarate dehydratase-related protein protein, length: 458 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33862
95 % 1 2 7176 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 1 2 7143
70 % 1 5 2959
50 % 9 22 731
40 % 9 22 756
30 % 136 262 29

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures