Sequence Similarity Clusters for the Entities in PDB 4GYP

Entity #1 | Chains: A,B
Glucarate dehydratase protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 2708
95 % 3 9 1823 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 9 1864
70 % 4 11 1568
50 % 8 22 690
40 % 8 22 719
30 % 116 237 26
Entity #2 | Chains: C,D
Glucarate dehydratase-related protein protein, length: 458 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32267
95 % 1 2 6602 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 1 2 6581
70 % 1 5 2745
50 % 9 22 690
40 % 9 22 719
30 % 117 237 26

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.