Sequence Similarity Clusters for the Entities in PDB 4GYP

Entity #1 | Chains: A,B
Glucarate dehydratase protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 2669
95 % 3 9 1801 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 9 1842
70 % 4 11 1542
50 % 8 22 667
40 % 8 22 695
30 % 116 234 25
Entity #2 | Chains: C,D
Glucarate dehydratase-related protein protein, length: 458 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31698
95 % 1 2 6507 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 1 2 6487
70 % 1 5 2710
50 % 9 22 667
40 % 9 22 695
30 % 117 234 25

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.