Sequence Similarity Clusters for the Entities in PDB 4GUU

Entity #1 | Chains: A
Lysine-specific histone demethylase 1B protein, length: 776 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 4198
95 % 5 10 4292 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 10 4319
70 % 5 10 4241
50 % 5 10 4076
40 % 5 10 3903
30 % 5 10 3622
Entity #2 | Chains: B
Putative oxidoreductase GLYR1 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 15831
95 % 4 5 14833
90 % 4 5 14563
70 % 4 5 13651
50 % 4 5 12123
40 % 4 5 10994
30 % 4 5 9542

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.