Sequence Similarity Clusters for the Entities in PDB 4GUT

Entity #1 | Chains: A
Lysine-specific histone demethylase 1B protein, length: 776 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 5103
95 % 1 10 4706 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 1 10 4737
70 % 1 10 4614
50 % 1 10 4429
40 % 1 10 4179
30 % 1 10 3778
Entity #2 | Chains: B
Putative oxidoreductase GLYR1 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 16563
95 % 1 5 15383
90 % 1 5 15058
70 % 1 5 14093
50 % 1 5 12457
40 % 1 5 11187
30 % 1 5 9512

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures