Sequence Similarity Clusters for the Entities in PDB 4GUT

Entity #1 | Chains: A
Lysine-specific histone demethylase 1B protein, length: 776 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 4313
95 % 1 10 4394 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 1 10 4422
70 % 1 10 4343
50 % 1 10 4166
40 % 1 10 3986
30 % 1 10 3693
Entity #2 | Chains: B
Putative oxidoreductase GLYR1 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 16227
95 % 1 5 15154
90 % 1 5 14883
70 % 1 5 13955
50 % 1 5 12382
40 % 1 5 11225
30 % 1 5 9740

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures