Sequence Similarity Clusters for the Entities in PDB 4GUS

Entity #1 | Chains: A
Lysine-specific histone demethylase 1B protein, length: 776 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 4313
95 % 4 10 4394 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 4 10 4422
70 % 4 10 4343
50 % 4 10 4166
40 % 4 10 3986
30 % 4 10 3693
Entity #2 | Chains: B
Putative oxidoreductase GLYR1 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 16227
95 % 3 5 15154
90 % 3 5 14883
70 % 3 5 13955
50 % 3 5 12382
40 % 3 5 11225
30 % 3 5 9740
Entity #3 | Chains: C
Histone H3.3 protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 25399
95 % 12 35 892 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 3.6
PDBFlex
90 % 12 35 925
70 % 12 35 954
50 % 12 35 994
40 % 12 35 1018
30 % 12 35 1001

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures