Sequence Similarity Clusters for the Entities in PDB 4GUS

Entity #1 | Chains: A
Lysine-specific histone demethylase 1B protein, length: 776 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 4203
95 % 4 10 4298 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 4 10 4325
70 % 4 10 4246
50 % 4 10 4082
40 % 4 10 3908
30 % 4 10 3625
Entity #2 | Chains: B
Putative oxidoreductase GLYR1 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 15844
95 % 3 5 14849
90 % 3 5 14579
70 % 3 5 13667
50 % 3 5 12138
40 % 3 5 11010
30 % 3 5 9555
Entity #3 | Chains: C
Histone H3.3 protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 24817
95 % 12 35 858 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 3.6
PDBFlex
90 % 12 35 891
70 % 12 35 925
50 % 12 35 974
40 % 12 35 1002
30 % 12 35 976

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.