Sequence Similarity Clusters for the Entities in PDB 4GUR

Entity #1 | Chains: A
Lysine-specific histone demethylase 1B protein, length: 776 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 4273
95 % 6 10 4348 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 6 10 4375
70 % 6 10 4297
50 % 6 10 4129
40 % 6 10 3952
30 % 6 10 3664
Entity #2 | Chains: B
Putative oxidoreductase GLYR1 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 16097
95 % 5 5 15045
90 % 5 5 14779
70 % 5 5 13863
50 % 5 5 12308
40 % 5 5 11154
30 % 5 5 9682
Entity #3 | Chains: C
Histone H3.3 protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 25197
95 % 15 35 883 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 3.6
PDBFlex
90 % 15 35 917
70 % 15 35 946
50 % 15 35 986
40 % 15 35 1011
30 % 15 35 988

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures