Sequence Similarity Clusters for the Entities in PDB 4GUR

Entity #1 | Chains: A
Lysine-specific histone demethylase 1B protein, length: 776 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 4384
95 % 6 10 4451 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 6 10 4488
70 % 6 10 4399
50 % 6 10 4220
40 % 6 10 4030
30 % 6 10 3736
Entity #2 | Chains: B
Putative oxidoreductase GLYR1 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 16480
95 % 5 5 15365
90 % 5 5 15084
70 % 5 5 14135
50 % 5 5 12532
40 % 5 5 11351
30 % 5 5 9852
Entity #3 | Chains: C
Histone H3.3 protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 25748
95 % 15 35 899 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 3.6
PDBFlex
90 % 15 35 935
70 % 15 35 967
50 % 15 35 999
40 % 15 35 1024
30 % 15 35 1013

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures