Sequence Similarity Clusters for the Entities in PDB 4GUR

Entity #1 | Chains: A
Lysine-specific histone demethylase 1B protein, length: 776 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 4150
95 % 6 10 4249 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.1
PDBFlex
90 % 6 10 4276
70 % 6 10 4208
50 % 6 10 4049
40 % 6 10 3878
30 % 6 10 3596
Entity #2 | Chains: B
Putative oxidoreductase GLYR1 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 15703
95 % 5 5 14725
90 % 5 5 14456
70 % 5 5 13567
50 % 5 5 12045
40 % 5 5 10927
30 % 5 5 9479
Entity #3 | Chains: C
Histone H3.3 protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 24630
95 % 15 34 881 Flexibility: Medium
Max RMSD: 6.6, Avg RMSD: 4.0
PDBFlex
90 % 15 34 916
70 % 15 34 952
50 % 15 34 1000
40 % 15 34 1020
30 % 15 34 994

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.