POP-OUT | CLOSE

An Information Portal to 110071 Biological Macromolecular Structures

Crystal structure of LSD2-NPAC with H3 in space group P21
Sequence Clustering and Redundancy Reduction Results
4GUR
Sequence Clusters for the Sequence Entities in PDB 4GUR
Entity #1: Chains: A - Lysine-specific histone demethylase 1B protein, length: 776 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 9 3210
95% 6 10 3346
90% 6 10 3378
70% 6 10 3357
50% 6 10 3282
40% 6 10 3162
30% 6 10 2936
Entity #2: Chains: B - Putative oxidoreductase GLYR1 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 5 12437
95% 5 5 11783
90% 5 5 11595
70% 5 5 10957
50% 5 5 9836
40% 5 5 8981
30% 5 5 7847
Entity #3: Chains: C - Histone H3.3 protein, length: 21 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 19673
95% 10 25 854
90% 10 25 883
70% 10 25 920
50% 10 25 968
40% 10 25 993
30% 10 25 976
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.