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An Information Portal to 107620 Biological Macromolecular Structures

Crystal structure of LSD2-NPAC with H3 in space group P21
Sequence Clustering and Redundancy Reduction Results
4GUR
Sequence Clusters for the Sequence Entities in PDB 4GUR
Entity #1: Chains: A - Lysine-specific histone demethylase 1B protein, length: 776 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 9 3117
95% 6 10 3276
90% 6 10 3304
70% 6 10 3285
50% 6 10 3216
40% 6 10 3101
30% 6 10 2881
Entity #2: Chains: B - Putative oxidoreductase GLYR1 protein, length: 124 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 5 12158
95% 5 5 11559
90% 5 5 11372
70% 5 5 10741
50% 5 5 9647
40% 5 5 8803
30% 5 5 7705
Entity #3: Chains: C - Histone H3.3 protein, length: 21 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 19247
95% 10 25 832
90% 10 25 862
70% 10 25 896
50% 10 25 943
40% 10 25 976
30% 10 25 960
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.