Sequence Similarity Clusters for the Entities in PDB 4GUR

Entity #1 | Chains: A
Lysine-specific histone demethylase 1B protein, length: 776 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 3995
95 % 6 10 4133 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.2
PDBFlex
90 % 6 10 4160
70 % 6 10 4076
50 % 6 10 3939
40 % 6 10 3779
30 % 6 10 3501
Entity #2 | Chains: B
Putative oxidoreductase GLYR1 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 15263
95 % 5 5 14317
90 % 5 5 14048
70 % 5 5 13176
50 % 5 5 11728
40 % 5 5 10636
30 % 5 5 9217
Entity #3 | Chains: C
Histone H3.3 protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 23914
95 % 15 34 860 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 3.6
PDBFlex
90 % 15 34 894
70 % 15 34 925
50 % 15 34 976
40 % 15 34 995
30 % 15 34 971

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.