Sequence Similarity Clusters for the Entities in PDB 4GUR

Entity #1 | Chains: A
Lysine-specific histone demethylase 1B protein, length: 776 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 4065
95 % 6 10 4192 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.1
PDBFlex
90 % 6 10 4219
70 % 6 10 4144
50 % 6 10 3994
40 % 6 10 3823
30 % 6 10 3541
Entity #2 | Chains: B
Putative oxidoreductase GLYR1 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 15449
95 % 5 5 14484
90 % 5 5 14212
70 % 5 5 13322
50 % 5 5 11846
40 % 5 5 10742
30 % 5 5 9316
Entity #3 | Chains: C
Histone H3.3 protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 24192
95 % 15 34 874
90 % 15 34 908
70 % 15 34 941
50 % 15 34 990
40 % 15 34 1011
30 % 15 34 985

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.