Sequence Similarity Clusters for the Entities in PDB 4GU0

Entity #1 | Chains: A,B,C,D
Lysine-specific histone demethylase 1B protein, length: 776 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 4065
95 % 10 10 4192 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.1
PDBFlex
90 % 10 10 4219
70 % 10 10 4144
50 % 10 10 3994
40 % 10 10 3823
30 % 10 10 3541
Entity #2 | Chains: E,F
Histone H3.3 protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48417
95 % 29 34 874 Flexibility: Medium
Max RMSD: 6.6, Avg RMSD: 4.2
PDBFlex
90 % 29 34 908
70 % 29 34 941
50 % 29 34 990
40 % 29 34 1011
30 % 29 34 985

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.