Sequence Similarity Clusters for the Entities in PDB 4GU0

Entity #1 | Chains: A,B,C,D
Lysine-specific histone demethylase 1B protein, length: 776 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 4150
95 % 10 10 4249 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.1
PDBFlex
90 % 10 10 4276
70 % 10 10 4208
50 % 10 10 4049
40 % 10 10 3878
30 % 10 10 3596
Entity #2 | Chains: E,F
Histone H3.3 protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49097
95 % 29 34 881
90 % 29 34 916
70 % 29 34 952
50 % 29 34 1000
40 % 29 34 1020
30 % 29 34 994

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.