Sequence Similarity Clusters for the Entities in PDB 4GSL

Entity #1 | Chains: A,B
Ubiquitin-like modifier-activating enzyme ATG7 protein, length: 615 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 17332
95 % 1 4 11460 Flexibility: Medium
Max RMSD: 5.9, Avg RMSD: 3.4
PDBFlex
90 % 1 4 11311
70 % 1 4 10722
50 % 1 4 9701
40 % 1 4 8877
30 % 1 4 7810
Entity #2 | Chains: C,D
Autophagy-related protein 3 protein, length: 312 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37458
95 % 2 2 22980 Flexibility: High
Max RMSD: 13.6, Avg RMSD: 13.6
PDBFlex
90 % 2 2 22302
70 % 2 2 20454
50 % 2 2 17706
40 % 2 2 15789
30 % 2 3 9450

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures