Sequence Similarity Clusters for the Entities in PDB 4GSL

Entity #1 | Chains: A,B
Ubiquitin-like modifier-activating enzyme ATG7 protein, length: 615 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16939
95 % 1 4 11203 Flexibility: Medium
Max RMSD: 5.9, Avg RMSD: 3.4
PDBFlex
90 % 1 4 11056
70 % 1 4 10496
50 % 1 4 9506
40 % 1 4 8700
30 % 1 4 7661
Entity #2 | Chains: C,D
Autophagy-related protein 3 protein, length: 312 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36725
95 % 2 2 22532 Flexibility: High
Max RMSD: 13.6, Avg RMSD: 13.6
PDBFlex
90 % 2 2 21882
70 % 2 2 20080
50 % 2 2 17409
40 % 2 2 15535
30 % 2 3 9286

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures